Logo
Information on SUBCLASS 3.3.2
Subclass Accession number: 2302
Subclass: 3.3.2 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 1 (>75 %)  
SCOP : 48263 (>75 %)  48264 (>75 %)  48265 (>75 %)  
Number of loops: 29

Average sequence ID (%) : 12.3 +/- 13.5
Average RMSD (Å) : 0.759 +/- 0.176

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXcXXXp
(φψ)-conformation: aagppaa
Pattern: xxx[acfiklmtv]xxx[degknrs][afgiklmtv][dknpst]x[adekqrst]x[acfiklmv]x
Conservation:-0.665-0.752-0.4870.311-0.970-0.259-0.7782.370-0.3161.757-0.9370.3640.4760.649-0.763
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8i_*_3451a8i   -351365RVLVDLERLDWDKAWHHHHHTT---HHHHHaaaaaaavxxaaaaa
1b0u_A_1101b0u   A116130EAPIQVLGLSKHDARHHHHHTT---HHHHHaaaaaaavxxaaaaa
1bed_*_1031bed   -107121RQIFLDEGIDAAKFDHHHHHTTT--HHHHHaaaaaaavxpaaaaa
1bx4_A_2951bx4   A306320FLSQLVSDKPLTECIHHHHHTTT--HHHHHaaaaaaavbxaaaaa
1c1d_A_2901c1d   A295309LVGREVLGWSESVVHHHHHHTT---HHHHHaaaaaaavxxaaaaa
1crb_*_161crb   -1731EEYLRALDVNVALRKHHHHHTTT--HHHHHaaaaaaavxpaaaaa
1csh_*_2431csh   -248262SHLVGSALSDPYLSFHHHHHTTT--HHHHHaaaaaaavxxaaaaa
1ejg_A_71ejg   A1327FNVCRLPGTPEALCAHHHHHTTT--HHHHHaaaaaaagpwaaaaa
1fse_A_141fse   A1933VFELLVQDKTTKEIAHHHHHTTT--HHHHHaaaaaaavbxaaaaa
1fx7_A_661fx7   A8498RLLVDVIGLPWEEVHHHHHHTT---HHHHHaaaaaaavxwaaaaa
1gz3_A_3141gz3   A324338VMSMVENGLSEQEAQHHHHHTTT--HHHHHaaaaaaavbxaaaaa
1ie9_A_2971ie9   A297311VSDVTKAGHSLELIEHHHHHTTT--HHHHHaaaaaaavxbaaaaa
1iom_A_1881iom   A193207AIAAFSTETDLYSAIHHHHHTTT--HHHHHaaaaaaavxxaaaaa
1is2_A_4801is2   A502516LQTHVSHRKSKEVAWHHHHHTTT--HHHHHaaaaaaavxxaaaaa
1k2x_B_2411k2x   B246260AALMDYGGLSLAEACHHHHHTT---HHHHHaaaaaaavxxaaaaa
1k7w_A_3721k7w   A376390ALYLVRKGVPFRQAHHHHHHTTT--HHHHHaaaaaaagxxaaaaa
1mdc_*_151mdc   -1630DGFLKSAGLSDDKIQHHHHHTTT--HHHHHaaaaaaavxxaaaaa
1n0u_A_6121n0u   A617631RIMADDYGWDVTDARHHHHHTT---HHHHHaaaaaaavxxaaaaa
1or7_A_1401or7   A146160ITLRELDGLSYEEIAHHHHHTT---HHHHHaaaaaaavxxaaaaa
1p28_A_11p28   A1428RECMGSVSATEDDFKHHHTGGGT--HHHHHaaaaaaalxxaaaaa
1q8y_A_6611q8y   A663677DVLTEKYKFSKDEAKHHHHHTT---HHHHHaaaaaaavxxaaaaa
1qkm_A_4201qkm   A438452VWVIAKSGISSQQQSHHHHHT---HHHHHHaaaaaaavxxaaaaa
1qo8_A_4421qo8   A443457EQLAKSTGMKVADLAHHHHHHTT--HHHHHaaaaaaavxxaaaaa
1riq_A_3801riq   A384398FTAYDTYGFPVDLIDHHHHHTS---HHHHHaaaaaaavxwaaaaa
1rp3_A_1871rp3   A193207IQLIFYEELPAKEVAHHHHHTS---HHHHHaaaaaaalbxaaaaa
1rtr_A_1791rtr   A187201MSAADIANVDDTTKEHHHHHHHT--HHHHHaaaaaaavxxaaaaa
1tfe_*_1151tfe   -126140IQAALNEGKPQQIAEHHHHHTTT--HHHHHaaaaaaavxxaaaaa
2gac_A_132gac   A2135AWKVLSKGGKALDAVHHHHHTTT--HHHHHaaaaaaavxxaaaaa
2pgd_*_1782pgd   -202216HLMKDVLGLGHKEMAHHHHHTS---HHHHHaaaaaaavxxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bx4_A_2951bx4   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED T - 295
1bx4_A_2951bx4   A     ADNADENOSINE T - 295
1bx4_A_2951bx4   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED N - 296
1bx4_A_2951bx4   A     ADNADENOSINE N - 296
1bx4_A_2951bx4   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED G - 297
1bx4_A_2951bx4   A     ADNADENOSINE G - 297
1bx4_A_2951bx4   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED A - 298
1bx4_A_2951bx4   A     ADNADENOSINE A - 298
1bx4_A_2951bx4   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED G - 299
1bx4_A_2951bx4   A     ADNADENOSINE G - 299
1bx4_A_2951bx4   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED D - 300
1bx4_A_2951bx4   A     ADNADENOSINE D - 300
1bx4_A_2951bx4   A     ADNADENOSINE F - 302
1bx4_A_2951bx4   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED V - 303
1bx4_A_2951bx4   A     ADNADENOSINE G - 323
1bx4_A_2951bx4   A     ADNADENOSINE H - 324
1bx4_A_2951bx4   A     ADNADENOSINE A - 327
1bx4_A_2951bx4   A     ADNADENOSINE S - 328
1c1d_A_2901c1d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 290
1c1d_A_2901c1d   A     PHEPHENYLALANINE G - 291
1c1d_A_2901c1d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 291
1c1d_A_2901c1d   A     PHEPHENYLALANINE A - 292
1c1d_A_2901c1d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 292
1c1d_A_2901c1d   A     PHEPHENYLALANINE L - 295
1c1d_A_2901c1d   A     PHEPHENYLALANINE V - 296
1crb_*_161crb   *     RTLRETINOL F - 16
1crb_*_161crb   *     RTLRETINOL Y - 19
1crb_*_161crb   *     RTLRETINOL L - 20
1crb_*_161crb   *     RTLRETINOL V - 25
1crb_*_161crb   *     RTLRETINOL L - 29
1crb_*_161crb   *     RTLRETINOL A - 33
1csh_*_2431csh   *     OAAOXALOACETATE ION V - 243
1csh_*_2431csh   *     OAAOXALOACETATE ION S - 244
1csh_*_2431csh   *     AMXAMIDOCARBOXYMETHYLDETHIA COENZYME *A L - 269
1csh_*_2431csh   *     OAAOXALOACETATE ION L - 269
1fx7_A_661fx7   A     COCOBALT (II) ION V - 75
1fx7_A_661fx7   A     COCOBALT (II) ION M - 76
1fx7_A_661fx7   A     COCOBALT (II) ION H - 79
1fx7_A_661fx7   A     COCOBALT (II) ION R - 80
1fx7_A_661fx7   A     COCOBALT (II) ION E - 83
1fx7_A_661fx7   A     COCOBALT (II) ION V - 97
1fx7_A_661fx7   A     COCOBALT (II) ION H - 98
1fx7_A_661fx7   A     COCOBALT (II) ION A - 101
1fx7_A_661fx7   A     COCOBALT (II) ION C - 102
1fx7_A_661fx7   A     COCOBALT (II) ION R - 103
1gz3_A_3141gz3   A     ATPADENOSINE-5'-TRIPHOSPHATE E - 314
1gz3_A_3141gz3   A     ATPADENOSINE-5'-TRIPHOSPHATE A - 315
1gz3_A_3141gz3   A     ATPADENOSINE-5'-TRIPHOSPHATE A - 316
1ie9_A_2971ie9   A     VDX5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL V - 300
1ie9_A_2971ie9   A     VDX5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL A - 303
1ie9_A_2971ie9   A     VDX5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL H - 305
1ie9_A_2971ie9   A     VDX5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL L - 309
1ie9_A_2971ie9   A     VDX5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL L - 313
1ie9_A_2971ie9   A     VDX5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL Q - 317
1iom_A_1881iom   A     CO3CARBONATE ION A - 188
1iom_A_1881iom   A     CO3CARBONATE ION S - 189
1mdc_*_151mdc   *     PLMPALMITIC ACID F - 15
1mdc_*_151mdc   *     PLMPALMITIC ACID F - 18
1mdc_*_151mdc   *     PLMPALMITIC ACID L - 19
1mdc_*_151mdc   *     PLMPALMITIC ACID S - 21
1mdc_*_151mdc   *     PLMPALMITIC ACID A - 22
1mdc_*_151mdc   *     PLMPALMITIC ACID L - 24
1mdc_*_151mdc   *     PLMPALMITIC ACID L - 32
1p28_A_11p28   A     HBSS,3-HYDROXYBUTAN-2-ONE Y - 5
1p28_A_11p28   A     HBRR,3-HYDROXYBUTAN-2-ONE Y - 5
1qkm_A_4201qkm   A     GENGENISTEIN K - 471
1qkm_A_4201qkm   A     GENGENISTEIN G - 472
1qkm_A_4201qkm   A     GENGENISTEIN M - 473
1qkm_A_4201qkm   A     GENGENISTEIN H - 475
1qkm_A_4201qkm   A     GENGENISTEIN L - 476
1riq_A_3801riq   A     MSESELENOMETHIONINE Y - 390
1riq_A_3801riq   A     MSESELENOMETHIONINE F - 392
1riq_A_3801riq   A     MSESELENOMETHIONINE I - 400
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gz3_A_3141gz3   A AC1ATP BINDING SITE FOR CHAIN AE - 314
1gz3_A_3141gz3   A AC1ATP BINDING SITE FOR CHAIN AA - 315

Clusters included in this Subclass
CLUSTER: HH.4.71
CLUSTER: HH.5.116
CLUSTER: HH.5.197
CLUSTER: HH.5.69
CLUSTER: HH.6.2