ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.3.5

Subclass Accession number: 2305
Subclass: 3.3.5

PSSM

Type: HH alpha-alpha
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 16.3 +/- 18.1
Average RMSD (Å) : 0.920 +/- 0.192

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 90-135

rho (°): 0-45

Consensus Sequence:	XXGXXhp
(φψ)-conformation:	aagppaa

Pattern:	[hkr]	x	[ert]	[tvy]	x	[AKQS]	x	[G]	[gitv]	[DNP]	[GILV]	[gks]	[AEST]	[ltv]	[ALMTV]	[adgq]	[AQS]	[AIMW]	x
Conservation:	-0.026	-0.914	-0.441	-0.176	-0.934	0.121	-0.479	3.652	-0.905	0.812	-0.055	-0.134	0.137	-0.226	-0.040	-0.761	0.365	-0.315	0.317

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1all_B_115	1all	B	116	134	KETYNSLGVPIGATVQAIQ	HHHHHHHT--HHHHHHHHH	aaaaaaavxxaaaaaaaaa
1bgx_T_628	1bgx	T	628	646	LIRVFQEGRDIHTETASWM	HHHHHHHT--HHHHHHHHH	aaaaaaavbxaaaaaaaaa
1irq_A_34	1irq	A	41	59	KIETAKNGGNVKEVMDQAL	HHHHHHHT--HHHHHHHHH	aaaaaaagxbaaaaaaaaa
1jbo_B_115	1jbo	B	116	134	RETYQALGTPGSSVAVAIQ	HHHHHHHT--HHHHHHHHH	aaaaaaavxxaaaaaaaaa
1umd_A_98	1umd	A	98	116	HGLALALGIPLKELLGQML	HHHHHHHT--HHHHHHHHH	aaaaaaagxpaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1all_B_115	1all	B	CYCPHYCOCYANOBILIN	L - 115
1all_B_115	1all	B	CYCPHYCOCYANOBILIN	T - 118
1all_B_115	1all	B	CYCPHYCOCYANOBILIN	Y - 119
1all_B_115	1all	B	CYCPHYCOCYANOBILIN	L - 122
1all_B_115	1all	B	CYCPHYCOCYANOBILIN	V - 124
1all_B_115	1all	B	CYCPHYCOCYANOBILIN	P - 125
1all_B_115	1all	B	CYCPHYCOCYANOBILIN	I - 126
1all_B_115	1all	B	CYCPHYCOCYANOBILIN	A - 128
1all_B_115	1all	B	CYCPHYCOCYANOBILIN	T - 129
1all_B_115	1all	B	CYCPHYCOCYANOBILIN	A - 132
1jbo_B_115	1jbo	B	MENN-METHYL ASPARAGINE	L - 122
1jbo_B_115	1jbo	B	MENN-METHYL ASPARAGINE	G - 123
1jbo_B_115	1jbo	B	MENN-METHYL ASPARAGINE	T - 124
1jbo_B_115	1jbo	B	CYCPHYCOCYANOBILIN	T - 124
1jbo_B_115	1jbo	B	MENN-METHYL ASPARAGINE	P - 125
1jbo_B_115	1jbo	B	CYCPHYCOCYANOBILIN	S - 128
1jbo_B_115	1jbo	B	CYCPHYCOCYANOBILIN	V - 129
1jbo_B_115	1jbo	B	CYCPHYCOCYANOBILIN	A - 144

Clusters included in this Subclass

CLUSTER: HH.2.108