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Information on SUBCLASS 3.3.8
Subclass Accession number: 2308
Subclass: 3.3.8 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005344 (>50 %)  GO:0008324 (>75 %)  GO:0015075 (>75 %)  
SCOP : 46457 (>50 %)  46458 (>50 %)  46463 (>50 %)  
Number of loops: 3

Average sequence ID (%) : 12.5 +/- 15.2
Average RMSD (Å) : 0.933 +/- 0.379

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: pXGXXXp
(φψ)-conformation: aagppaa
Pattern: xx[DK][HV]x[ERS][ILT][G]x[DKP][APT][EQY][ANQ][FGY][KPR][ILY]
Conservation:-0.596-1.1150.5550.597-0.682-0.250-0.1643.381-0.582-0.250-0.2500.009-0.509-0.1640.0090.009
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cg5_B_821cg5   B85100SGKHQEIGVDTQNFKLHHHHHHHT--THHHHHaaaaaaagxxaaaaaa
1cqx_A_711cqx   A8297ANKHASLGVKPEQYPIHHHHHHHT--GGGHHHaaaaaaavxbaaaaaa
1qzz_A_1261qzz   A126141LLDVVRTGRPAYAGRYHHHHHHHS--SHHHHHaaaaaaavxxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 84
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE K - 87
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE H - 88
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE I - 91
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE V - 93
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE D - 94
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE N - 97
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE F - 98
1cg5_B_821cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 101
1cqx_A_711cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL L - 74
1cqx_A_711cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL V - 77
1cqx_A_711cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 78
1cqx_A_711cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL L - 78
1cqx_A_711cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 80
1cqx_A_711cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 81
1cqx_A_711cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL I - 81
1cqx_A_711cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 84
1cqx_A_711cqx   A     FADFLAVIN-ADENINE DINUCLEOTIDE K - 84
1cqx_A_711cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 85
1cqx_A_711cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 88
1cqx_A_711cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 90
1cqx_A_711cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 91
1cqx_A_711cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 94
1cqx_A_711cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 95
1cqx_A_711cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE P - 96
1cqx_A_711cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 98
1cqx_A_711cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL V - 98
1cqx_A_711cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL L - 102
1cqx_A_711cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL I - 106

Clusters included in this Subclass
CLUSTER: HH.5.215