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Information on SUBCLASS 3.4.2
Subclass Accession number: 2310
Subclass: 3.4.2 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 29

Average sequence ID (%) : 10.1 +/- 12.6
Average RMSD (Å) : 0.648 +/- 0.260

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXXXpXX
(φψ)-conformation: aapapaa
Pattern: [adegknqrst]x[acgilmvwy]xxx[dehknpqrst][dhknrsty]x[adegknqst]xxx
Conservation:0.255-1.483-0.633-0.228-0.7140.3460.0352.1750.6740.722-0.3360.711-1.525
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a3a_A_1251a3a   A129141ERLAHTTSVDEVLHHHHH---HHHHHaaaaaxabaaaaa
1dbh_A_3451dbh   A359371QLEEKSEDQEDKEHHHHH-S-HHHHHaaaaapabaaaaa
1dkz_A_5591dkz   A573585ETALKGEDKAAIEHHHHTSS-HHHHHaaaaabaxaaaaa
1dpe_*_4371dpe   -444456QPARATDDHNKRVHHHHH---HHHHHaaaaaxaxaaaaa
1dqw_A_61dqw   A820ERAATHPSPVAAKHHHHH-S-HHHHHaaaaapaxaaaaa
1dvp_A_841dvp   A92104SFLESTPHENVRQHHHHH-S-HHHHHaaaaaxabaaaaa
1ee4_A_891ee4   A93105TQQLNSDDMQEQLHHHHT-S-HHHHHaaaaaxaxaaaaa
1gwc_A_1101gwc   A114126RQWLRGKTEEEKSHHHHH-SSHHHHHaaaaaxaxaaaaa
1he1_A_1441he1   A154166GIRAGSQVEESRIHHHHH-S-HHHHHaaaaaxabaaaaa
1hn0_A_3361hn0   A348360RAYVLEKDPTQKAHHHHH--SHHHHHaaaaaxaxaaaaa
1hs6_A_5501hs6   A556568KMATEQGRMKFTRHHHHH---HHHHHaaaaabaxaaaaa
1i1i_P_2221i1i   P227239PVMKKCCVPETRRHHHHH---HHHHHaaaaapaxaaaaa
1jdh_A_1921jdh   A200212RTMQNTNDVETARHHHHH---HHHHHaaaaaxaxaaaaa
1jdh_A_3201jdh   A326338NIMRTYTYEKLLWHHHHH---HHHHHaaaaaxaxaaaaa
1jkv_A_1371jkv   A157169RLYSMTEDEGVRDHHHTT---HHHHHaaaaabaxaaaaa
1k0m_A_1101k0m   A115127SAYIKNSNPALNDHHHHH---HHHHHaaaaaxaxaaaaa
1kid_*_3391kid   -351363QQIEEATSDYDREHHHHH--SHHHHHaaaaaxabaaaaa
1kkh_A_2181kkh   A230242DEALKIKNKEDFGHHHHH--SHHHHHaaaaapabaaaaa
1kp8_A_3391kp8   A351363QQIEEATSDYDREHHHHS--SHHHHHaaaaaxabaaaaa
1m0l_A_1051m0l   A123135LVGALTKVYSYRFHHHHH-SSHHHHHaaaaaxaxaaaaa
1m5w_A_1571m5w   A157169GCYADAKTDAEQAHHHHH--SHHHHHaaaaapabaaaaa
1o8a_A_1641o8a   A167179NVMATSRKYEDLLHHHHH---HHHHHaaaaaxabaaaaa
1ovn_A_1651ovn   A177189AKQEQLTDPEQQQHHHHH--SHHHHHaaaaaxaxaaaaa
1oy3_D_2771oy3   D279291GSALLRPNPILARHHHHTSS-HHHHHaaaaabapaaaaa
1qas_A_2481qas   A254266LIERYEPSETAKAHHHHH---HHHHHaaaaaxaxaaaaa
1qv9_A_2061qv9   A219231EGCFVEQDKERYVHHHHT---HHHHHaaaaaxaxaaaaa
1tgo_A_4481tgo   A465477KKMKATIDPIEKKHHHHH---HHHHHaaaaaxaxaaaaa
1uiu_A_4281uiu   A436448GEVLATHDETQRQHHHHH---HHHHHaaaaaxaxaaaaa
256b_A_3256b   A1527KVIEKADNAAQVKHHHHH--SHHHHHaaaaaxabaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dbh_A_3451dbh   A     MSESELENOMETHIONINE P - 346
1dbh_A_3451dbh   A     MSESELENOMETHIONINE V - 347
1dbh_A_3451dbh   A     MSESELENOMETHIONINE C - 350
1dbh_A_3451dbh   A     MSESELENOMETHIONINE L - 351
1dbh_A_3451dbh   A     MSESELENOMETHIONINE F - 354
1dpe_*_4371dpe   *     CDCADMIUM ION H - 452
1dpe_*_4371dpe   *     CDCADMIUM ION V - 456
1dpe_*_4371dpe   *     CDCADMIUM ION E - 457
1dpe_*_4371dpe   *     CDCADMIUM ION H - 467
1dpe_*_4371dpe   *     CDCADMIUM ION D - 468
1gwc_A_1101gwc   A     GTXS-HEXYLGLUTATHIONE R - 114
1gwc_A_1101gwc   A     GTXS-HEXYLGLUTATHIONE R - 118
1he1_A_1441he1   A     GDPGUANOSINE-5'-DIPHOSPHATE R - 146
1he1_A_1441he1   A     AF3ALUMINUM FLUORIDE R - 146
1he1_A_1441he1   A     MGMAGNESIUM ION R - 146
1he1_A_1441he1   A     AF3ALUMINUM FLUORIDE T - 150
1hs6_A_5501hs6   A     BES2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID R - 563
1hs6_A_5501hs6   A     BES2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID K - 565
1jkv_A_1371jkv   A     EDO1,2-ETHANEDIOL M - 141
1jkv_A_1371jkv   A     EDO1,2-ETHANEDIOL R - 142
1jkv_A_1371jkv   A     EDO1,2-ETHANEDIOL F - 143
1jkv_A_1371jkv   A     EDO1,2-ETHANEDIOL V - 145
1jkv_A_1371jkv   A     EDO1,2-ETHANEDIOL V - 146
1jkv_A_1371jkv   A     OHHYDROXIDE ION R - 147
1jkv_A_1371jkv   A     AZIAZIDE ION R - 147
1jkv_A_1371jkv   A     MN3MANGANESE (III) ION R - 147
1jkv_A_1371jkv   A     OHHYDROXIDE ION E - 148
1jkv_A_1371jkv   A     AZIAZIDE ION E - 148
1jkv_A_1371jkv   A     MN3MANGANESE (III) ION E - 148
1jkv_A_1371jkv   A     EDO1,2-ETHANEDIOL S - 149
1jkv_A_1371jkv   A     OHHYDROXIDE ION A - 151
1jkv_A_1371jkv   A     AZIAZIDE ION A - 151
1jkv_A_1371jkv   A     OHHYDROXIDE ION V - 155
1jkv_A_1371jkv   A     AZIAZIDE ION V - 155
1jkv_A_1371jkv   A     OHHYDROXIDE ION L - 174
1jkv_A_1371jkv   A     AZIAZIDE ION L - 174
1jkv_A_1371jkv   A     MN3MANGANESE (III) ION L - 174
1jkv_A_1371jkv   A     OHHYDROXIDE ION L - 175
1jkv_A_1371jkv   A     AZIAZIDE ION L - 175
1jkv_A_1371jkv   A     OHHYDROXIDE ION R - 177
1jkv_A_1371jkv   A     AZIAZIDE ION R - 177
1jkv_A_1371jkv   A     MN3MANGANESE (III) ION R - 177
1jkv_A_1371jkv   A     OHHYDROXIDE ION E - 178
1jkv_A_1371jkv   A     AZIAZIDE ION E - 178
1jkv_A_1371jkv   A     MN3MANGANESE (III) ION E - 178
1jkv_A_1371jkv   A     OHHYDROXIDE ION H - 181
1jkv_A_1371jkv   A     MN3MANGANESE (III) ION H - 181
1jkv_A_1371jkv   A     MN3MANGANESE (III) ION F - 185
1jkv_A_1371jkv   A     EDO1,2-ETHANEDIOL M - 186
1jkv_A_1371jkv   A     EDO1,2-ETHANEDIOL Q - 189
1jkv_A_1371jkv   A     EDO1,2-ETHANEDIOL E - 193
1m0l_A_1051m0l   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL I - 108
1m0l_A_1051m0l   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL V - 112
1m0l_A_1051m0l   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL G - 116
1m0l_A_1051m0l   A     RETRETINAL M - 118
1m0l_A_1051m0l   A     RETRETINAL I - 119
1m0l_A_1051m0l   A     RETRETINAL T - 121
1m0l_A_1051m0l   A     RETRETINAL G - 122
1m0l_A_1051m0l   A     RETRETINAL L - 123
1m0l_A_1051m0l   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL Y - 131
1m0l_A_1051m0l   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL S - 132
1m0l_A_1051m0l   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL Y - 133
1m0l_A_1051m0l   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL F - 135
1m0l_A_1051m0l   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL V - 136
1m0l_A_1051m0l   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL W - 137
1m0l_A_1051m0l   A     RETRETINAL W - 137
1m0l_A_1051m0l   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL W - 138
1m0l_A_1051m0l   A     RETRETINAL W - 138
1m0l_A_1051m0l   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL A - 139
1m0l_A_1051m0l   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL I - 140
1m0l_A_1051m0l   A     RETRETINAL S - 141
1m0l_A_1051m0l   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL T - 142
1m0l_A_1051m0l   A     RETRETINAL T - 142
1m0l_A_1051m0l   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL A - 143
1m0l_A_1051m0l   A     RETRETINAL A - 143
1m0l_A_1051m0l   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL M - 145
1m0l_A_1051m0l   A     RETRETINAL M - 145
1m0l_A_1051m0l   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL L - 146
1m0l_A_1051m0l   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL F - 153
1m0l_A_1051m0l   A     LI11-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL F - 154
1o8a_A_1641o8a   A     NAGN-ACETYL-D-GLUCOSAMINE W - 180
1qv9_A_2061qv9   A     MSESELENOMETHIONINE A - 206
1qv9_A_2061qv9   A     MSESELENOMETHIONINE L - 207
1qv9_A_2061qv9   A     MSESELENOMETHIONINE E - 208
1qv9_A_2061qv9   A     MSESELENOMETHIONINE I - 209
1qv9_A_2061qv9   A     MSESELENOMETHIONINE A - 210
1qv9_A_2061qv9   A     MSESELENOMETHIONINE E - 211
1qv9_A_2061qv9   A     MSESELENOMETHIONINE N - 212
1qv9_A_2061qv9   A     MSESELENOMETHIONINE V - 213
1qv9_A_2061qv9   A     MSESELENOMETHIONINE A - 214
1qv9_A_2061qv9   A     MSESELENOMETHIONINE V - 216
1qv9_A_2061qv9   A     MSESELENOMETHIONINE S - 217
1qv9_A_2061qv9   A     MSESELENOMETHIONINE V - 218
1qv9_A_2061qv9   A     MSESELENOMETHIONINE C - 221
1qv9_A_2061qv9   A     MSESELENOMETHIONINE F - 222
1qv9_A_2061qv9   A     MSESELENOMETHIONINE A - 235
1qv9_A_2061qv9   A     MSESELENOMETHIONINE S - 236
1qv9_A_2061qv9   A     MSESELENOMETHIONINE A - 237
1qv9_A_2061qv9   A     MSESELENOMETHIONINE H - 238
256b_A_3256b   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 3
256b_A_3256b   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 4
256b_A_3256b   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 5
256b_A_3256b   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 6
256b_A_3256b   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 7
256b_A_3256b   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 8
256b_A_3256b   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 9
256b_A_3256b   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 10
256b_A_3256b   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 11
256b_A_3256b   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 14
256b_A_3256b   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 33
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gwc_A_1101gwc   A AC5SO4 BINDING SITE FOR CHAIN AR - 114
1he1_A_1441he1   A AC1GDP BINDING SITE FOR CHAIN CR - 146
1o8a_A_1641o8a   A CL1CL BINDING SITE FOR CHAIN AR - 186

Clusters included in this Subclass
CLUSTER: HH.2.30
CLUSTER: HH.3.23
CLUSTER: HH.4.135
CLUSTER: HH.4.23