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Information on SUBCLASS 3.5.2
Subclass Accession number: 2320
Subclass: 3.5.2 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 1 (>50 %)  
SCOP : 55468 (>75 %)  55469 (>75 %)  55470 (>75 %)  
Number of loops: 10

Average sequence ID (%) : 10.6 +/- 12.5
Average RMSD (Å) : 0.750 +/- 0.178

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: pXhppXp
(φψ)-conformation: aabapaa
Pattern: [afilpy]x[ADKNRT]x[acivw][gkrst][DENST]x[AEKQRS][aegqt][efkqr][aeknq][ekqry][AILTV]
Conservation:-0.845-1.5760.487-0.807-0.4170.1662.197-0.9231.315-0.2410.141-0.312-0.2241.038
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1h0o_A_1571h0o   A181194IDTYIKDPKEREYLHHHH---HHHHHHHaaaabaxaaaaaaa
1h97_A_1051h97   A119132FQNLVKDAEGKAAVHHHHSSSHHHHHHHaaaababaaaaaaa
1ii2_A_4751ii2   A475488PRKAWKDVRQFNETHHHH-S-HHHHHHHaaaaxabaaaaaaa
1l7a_A_2241l7a   A228241FFRRNGSPETEVQAHHHHS--HHHHHHHaaaabapaaaaaaa
1n81_A_1161n81   A139152NVDHAREVKEKKRIHHHH-SSHHHHHHHaaaaxaxaaaaaaa
1o7e_B_241o7e   B2639AITAASDFAALEKAHHHH--SHHHHHHHaaaaxabaaaaaaa
1or4_A_1301or4   A148161YEASITNQQELLKAHHHH--SHHHHHHHaaaabaxaaaaaaa
1r3c_A_2441r3c   A246259LLKKISSESARNYIHHHH---HHHHHHHaaaaxapaaaaaaa
1s3e_A_1481s3e   A152165LDKLCWTESAKQLAHHHH-SSHHHHHHHaaaaxabaaaaaaa
2fok_A_412fok   A4255IPTLVKESKIQKELHHHH--SHHHHHHHaaaabapaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1h0o_A_1571h0o   A     COCOBALT (II) ION Q - 166
1h0o_A_1571h0o   A     COCOBALT (II) ION E - 170
1h0o_A_1571h0o   A     COCOBALT (II) ION H - 173
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 107
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 108
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 109
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 110
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 111
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 112
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 115
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 136
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 139
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 140
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 143
1or4_A_1301or4   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 132
1or4_A_1301or4   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 133
1or4_A_1301or4   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 136
1or4_A_1301or4   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 137
1or4_A_1301or4   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 140
1or4_A_1301or4   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 172
1s3e_A_1481s3e   A     RHP(3R)-3-(PROP-2-YNYLAMINO)INDAN-5-OL F - 168
1s3e_A_1481s3e   A     RHP(3R)-3-(PROP-2-YNYLAMINO)INDAN-5-OL L - 171
1s3e_A_1481s3e   A     RHP(3R)-3-(PROP-2-YNYLAMINO)INDAN-5-OL C - 172
1s3e_A_1481s3e   A     RHP(3R)-3-(PROP-2-YNYLAMINO)INDAN-5-OL V - 173
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h0o_A_1571h0o   A CO1CO BINDING SITE FOR CHAIN AQ - 166
1h0o_A_1571h0o   A CO1CO BINDING SITE FOR CHAIN AE - 170
1o7e_B_241o7e   B AC6SO4 BINDING SITE FOR CHAIN BD - 24

Clusters included in this Subclass
CLUSTER: HH.2.111
CLUSTER: HH.3.52