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Information on SUBCLASS 3.5.3
Subclass Accession number: 2321
Subclass: 3.5.3 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 9.5 +/- 11.5
Average RMSD (Å) : 0.857 +/- 0.230

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: pXXXcXX
(φψ)-conformation: aabapaa
Pattern: [adekr][ael][AILV]x[dekrt]xx[kqrsw][DGNT]x[agkv]xx[eqs]xx
Conservation:-0.094-0.0912.108-0.834-0.231-0.948-0.507-0.2882.219-1.249-0.043-0.393-0.2821.262-0.176-0.453
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a28_A_8381a28   A854869KAIGLRQKGVVSSSQRHHHHTT--SHHHHHHHaaaaaabapaaaaaaa
1f5m_A_211f5m   A3348EGLSDGQVNWVCNLSNHHHHTT--BHHHHHHHaaaaaabapaaaaaaa
1h0o_A_1571h0o   A179194LLIDTYIKDPKEREYLHHHHHH---HHHHHHHaaaaaabaxaaaaaaa
1o7e_B_241o7e   B2439DAAITAASDFAALEKAHHHHHH--SHHHHHHHaaaaaaxabaaaaaaa
1s3e_A_1481s3e   A150165ELLDKLCWTESAKQLAHHHHHH-SSHHHHHHHaaaaaaxabaaaaaaa
1v9m_A_1461v9m   A152167RAVLRETQDLARVEALHHHHTT---HHHHHHHaaaaaabaxaaaaaaa
1vh4_A_3821vh4   A395410AELTEALRDEGLKQQVHHHHTT---HHHHHHHaaaaaaxaxaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a28_A_8381a28   A     STRPROGESTERONE L - 887
1a28_A_8381a28   A     STRPROGESTERONE Y - 890
1a28_A_8381a28   A     STRPROGESTERONE C - 891
1a28_A_8381a28   A     STRPROGESTERONE L - 892
1a28_A_8381a28   A     STRPROGESTERONE T - 894
1a28_A_8381a28   A     STRPROGESTERONE F - 895
1h0o_A_1571h0o   A     COCOBALT (II) ION Q - 166
1h0o_A_1571h0o   A     COCOBALT (II) ION E - 170
1h0o_A_1571h0o   A     COCOBALT (II) ION H - 173
1s3e_A_1481s3e   A     RHP(3R)-3-(PROP-2-YNYLAMINO)INDAN-5-OL F - 168
1s3e_A_1481s3e   A     RHP(3R)-3-(PROP-2-YNYLAMINO)INDAN-5-OL L - 171
1s3e_A_1481s3e   A     RHP(3R)-3-(PROP-2-YNYLAMINO)INDAN-5-OL C - 172
1s3e_A_1481s3e   A     RHP(3R)-3-(PROP-2-YNYLAMINO)INDAN-5-OL V - 173
1v9m_A_1461v9m   A     GOLGLYCEROL P - 146
1v9m_A_1461v9m   A     GOLGLYCEROL R - 149
1v9m_A_1461v9m   A     GOLGLYCEROL D - 175
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h0o_A_1571h0o   A CO1CO BINDING SITE FOR CHAIN AQ - 166
1h0o_A_1571h0o   A CO1CO BINDING SITE FOR CHAIN AE - 170
1o7e_B_241o7e   B AC6SO4 BINDING SITE FOR CHAIN BD - 24

Clusters included in this Subclass
CLUSTER: HH.4.69