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Information on SUBCLASS 3.6.3
Subclass Accession number: 2329
Subclass: 3.6.3 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 10.0 +/- 12.0
Average RMSD (Å) : 0.587 +/- 0.270

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XpXXpXX
(φψ)-conformation: aapabaa
Pattern: [akqrst]x[ailvy][aegrs][aekqrs]x[depqrs][nst][depqs]xxxxx[CIKLV]x
Conservation:-0.103-0.9350.451-0.9430.410-0.188-0.6892.4750.4740.7070.1420.368-1.574-1.0041.145-0.735
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a6j_A_1341a6j   A138153RRLRAAQSDEELYQIIHHHHH--SHHHHHHHHaaaaapabaaaaaaaa
1ezf_A_2701ezf   A275290TYLSRLRNQSVFNFCAHHHHT---HHHHHHHHaaaaaxaxaaaaaaaa
1k0m_A_1101k0m   A115130SAYIKNSNPALNDNLEHHHHH---HHHHHHHHaaaaaxaxaaaaaaaa
1mty_B_1641mty   B165180QGAREALSDVTRVSLAHHHHH-SSHHHHHHHHaaaaapabaaaaaaaa
1omw_A_801omw   A90105KKYEKLETEEERLVCSHHHHT--SHHHHHHHHaaaaaxabaaaaaaaa
1owl_A_2541owl   A263278AAHALSRSDEARNSIRHHHHH---HHHHHHHHaaaaaxabaaaaaaaa
1qsa_A_5721qsa   A574589AFVESIPFSETRGYVKHHHHH-S-HHHHHHHHaaaaapaxaaaaaaaa
3thi_A_1243thi   A124139LKIGQVDNIYELYKKIHHHHT--BHHHHHHHHaaaaaxabaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ezf_A_2701ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID Y - 276
1ezf_A_2701ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID F - 288
1ezf_A_2701ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID C - 289
1ezf_A_2701ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID P - 292
1ezf_A_2701ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID Q - 293
1ezf_A_2701ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID M - 295
1owl_A_2541owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE W - 280
1owl_A_2541owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE E - 283
1owl_A_2541owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 284
1owl_A_2541owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE W - 286
1owl_A_2541owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE R - 287
1owl_A_2541owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 290
1qsa_A_5721qsa   A     GOLGLYCEROL A - 572
1qsa_A_5721qsa   A     GOLGLYCEROL V - 573
1qsa_A_5721qsa   A     GOLGLYCEROL A - 574
1qsa_A_5721qsa   A     GOLGLYCEROL Y - 587
1qsa_A_5721qsa   A     GOLGLYCEROL Y - 594
1qsa_A_5721qsa   A     GOLGLYCEROL D - 595
1qsa_A_5721qsa   A     GOLGLYCEROL A - 596
1qsa_A_5721qsa   A     GOLGLYCEROL R - 599

Clusters included in this Subclass
CLUSTER: HH.2.166
CLUSTER: HH.3.95
CLUSTER: HH.4.163