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Information on SUBCLASS 3.6.5
Subclass Accession number: 2331
Subclass: 3.6.5 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0004590 (>75 %)  GO:0016829 (>75 %)  GO:0016830 (>75 %)  GO:0016831 (>75 %)  
SCOP : 51350 (>75 %)  51366 (>75 %)  51375 (>75 %)  
 Number of loops: 4

Average sequence ID (%) : 33.3 +/- 21.1
Average RMSD (Å) : 0.225 +/- 0.050

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXAXpPX
(φψ)-conformation: aapabaa
Pattern: [RS][AS][I]xx[A][ADE][DENS][P]x[AES][AV][AI][ARS][AGKQ][FIL]x[EKR][ES]
Conservation:-0.1740.4311.200-0.920-1.4121.200-0.496-0.1253.018-1.109-0.2980.164-0.095-0.448-0.8440.067-0.5780.1880.230
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1h1y_A_2011h1y   A201219SSIFGAAEPGEVISALRKSHHHHTSS-HHHHHHHHHHHaaaaaxabaaaaaaaaaaa
1km4_A_2031km4   A203221RSIYLADNPAAAAAGIIESHHHHTSSSHHHHHHHHHHHaaaaaxabaaaaaaaaaaa
1q6o_A_1921q6o   A192210RSIRDAASPVEAARQFKRSHHHHTSS-HHHHHHHHHHHaaaaaxabaaaaaaaaaaa
2tps_A_2092tps   A209227SAISQAEDPESAARKFREEHHHHTSS-HHHHHHHHHHHaaaaaxabaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1km4_A_2031km4   A     UURIDINE-5'-MONOPHOSPHATE R - 203
1km4_A_2031km4   A     UURIDINE-5'-MONOPHOSPHATE S - 204
1km4_A_2031km4   A     UURIDINE-5'-MONOPHOSPHATE Y - 206
1q6o_A_1921q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE R - 192
1q6o_A_1921q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE S - 193
1q6o_A_1921q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE R - 195
2tps_A_2092tps   A     TPSTHIAMIN PHOSPHATE S - 209
2tps_A_2092tps   A     TPSTHIAMIN PHOSPHATE A - 210
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h1y_A_2011h1y   A SO1SO4 BINDING SITE FOR CHAIN AS - 201

Clusters included in this Subclass
CLUSTER: HH.5.67