Logo
Information on SUBCLASS 3.6.8
Subclass Accession number: 2334
Subclass: 3.6.8 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 7.8 +/- 8.8
Average RMSD (Å) : 0.900 +/- 0.100

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XphhcXX
(φψ)-conformation: aapabaa
Pattern: x[ANS]xx[NR][ACY][APW][DN]x[AE]x[AK]xxxxx
Conservation:-0.5760.352-0.692-0.6921.7210.120-0.5762.667-0.8071.008-0.4600.697-0.576-0.807-0.807-0.344-0.228
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1k32_A_6821k32   A696712LARDNYWNEAVAKEISEHHHHH-S-HHHHHHHHHaaaaapabaaaaaaaaa
1mzg_A_71mzg   A1228RNFLRCANWEEKYLYIIHHHHH-SSHHHHHHHHHaaaaapabaaaaaaaaa
1vc4_A_2371vc4   A237253TSLMRAPDLEAALRELVHHHHTSS-HHHHHHHHHaaaaaxabaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1mzg_A_71mzg   A     MSESELENOMETHIONINE K - 7
1mzg_A_71mzg   A     MSESELENOMETHIONINE L - 10
1mzg_A_71mzg   A     MSESELENOMETHIONINE L - 11
1mzg_A_71mzg   A     MSESELENOMETHIONINE F - 14
1mzg_A_71mzg   A     MSESELENOMETHIONINE L - 15
1mzg_A_71mzg   A     MSESELENOMETHIONINE W - 20
1mzg_A_71mzg   A     MSESELENOMETHIONINE K - 23
1mzg_A_71mzg   A     MSESELENOMETHIONINE I - 27

Clusters included in this Subclass
CLUSTER: HH.4.265