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Information on SUBCLASS 4.1.2
Subclass Accession number: 2362
Subclass: 4.1.2 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 26

Average sequence ID (%) : 15.1 +/- 15.8
Average RMSD (Å) : 0.642 +/- 0.264

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XXcXhpXp
(φψ)-conformation: aalabpaa
Pattern: xx[afilmvwy][adeknrst]x[ADEGKQ]x[fhilmvw][dehkstw]x[adegknqrst][adeknqt][acfiltv]
Conservation:-0.758-1.1140.513-0.423-0.5292.353-1.3520.5920.627-0.9410.3900.5560.086
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1afr_A_1311afr   A153165YLYLSGRVDMRQIHHHHH-SS-HHHHaaaaavabxaaaa
1aor_A_3441aor   A356368ELYEKGHIKDEELHHHHTTSS-HHHHaaaaavabbaaaa
1d2t_A_1691d2t   A182194SRVICGYHWQSDVHHHHHTSS-HHHHaaaaavabxaaaa
1d8c_A_6321d8c   A644656NWLRHGILTKEQVHHHHTTSS-HHHHaaaaavabbaaaa
1dnp_A_2381dnp   A239251ASLATGGLSPRQCHHHHHTSS-HHHHaaaaavabbaaaa
1dvp_A_231dvp   A3143DEINQKDVTPKNAHHHHTTSS-HHHHaaaaavabxaaaa
1h16_A_2801h16   A289301RDLKAGKITEQEAHHHHTTSS-HHHHaaaaavabxaaaa
1h6k_A_5981h6k   A607619KMIRTQIVDCAAVHHHHTTSS-HHHHaaaaavabbaaaa
1ikt_A_761ikt   A8092MEVVLGKLDPQKAHHHHTTSS-HHHHaaaaavabxaaaa
1ire_B_281ire   B3951ATFRAGFMGLDEFHHHHTTS--HHHHaaaaavabbaaaa
1ire_B_681ire   B7991HGVRTGKIDLEELHHHHTT-S-HHHHaaaaavabxaaaa
1j1n_A_4281j1n   A450462QAWVMGTKDVDKTHHHHHTSS-HHHHaaaaavabxaaaa
1jj2_M_111jj2   M1123RRRREARTDYHQRHHHHTT---HHHHaaaaalabxaaaa
1l6s_A_2721l6s   A280292FAALAGAIDEEKVHHHHTTSS-HHHHaaaaavabxaaaa
1m22_A_501m22   A5567ARMTAGELDSTTLHHHHTTS--HHHHaaaaavabbaaaa
1n3l_A_2921n3l   A297309KDFAAEVVHPGDLHHHHTT-S-HHHHaaaaavabxaaaa
1np7_A_2531np7   A254266PWLALGCLSPRFIHHHHTTSS-HHHHaaaaavabxaaaa
1o9p_A_41o9p   A921RRIETGELSPNAAHHHHTTSS-HHHHaaaaavabxaaaa
1odo_A_2621odo   A266278ALVRKGEVTWADVHHHHHTSS-HHHHaaaaavabbaaaa
1ols_A_3151ols   A322334YLLSQGWWDEEQEHHHHHT---HHHHaaaaavabbaaaa
1paq_A_6511paq   A661673SLYDNDIIEEDVIHHHHTTSS-HHHHaaaaavabbaaaa
1qs0_A_3351qs0   A342354HLIKIGHWSEEEHHHHHTTS--HHHHaaaaavabbaaaa
1t2d_A_1991t2d   A201213EFINNKLISDAELHHHHTTSS-HHHHaaaaavabxaaaa
2ahj_B_352ahj   B4355GVAELGAFSVDEVHHHTS----HHHHaaaaalabbaaaa
2ahj_B_722ahj   B8395LMVEKGILTQDELHHHHTTSS-HHHHaaaaavabbaaaa
2fok_A_5482fok   A556568EMIKAGTLTLEEVHHHHHTS--HHHHaaaaavabbaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1afr_A_1311afr   A     FE2FE (II) ION W - 139
1afr_A_1311afr   A     FE2FE (II) ION E - 143
1afr_A_1311afr   A     FE2FE (II) ION H - 146
1aor_A_3441aor   A     PTETUNGSTOPTERIN COFACTOR T - 344
1aor_A_3441aor   A     PTETUNGSTOPTERIN COFACTOR I - 345
1d8c_A_6321d8c   A     MGMAGNESIUM ION A - 633
1d8c_A_6321d8c   A     GLVGLYOXYLIC ACID A - 633
1d8c_A_6321d8c   A     MSESELENOMETHIONINE R - 636
1d8c_A_6321d8c   A     MSESELENOMETHIONINE I - 637
1d8c_A_6321d8c   A     MSESELENOMETHIONINE S - 638
1d8c_A_6321d8c   A     MSESELENOMETHIONINE Q - 640
1d8c_A_6321d8c   A     MSESELENOMETHIONINE H - 641
1d8c_A_6321d8c   A     MSESELENOMETHIONINE A - 643
1d8c_A_6321d8c   A     MSESELENOMETHIONINE N - 644
1d8c_A_6321d8c   A     MSESELENOMETHIONINE W - 645
1d8c_A_6321d8c   A     MSESELENOMETHIONINE R - 647
1d8c_A_6321d8c   A     MSESELENOMETHIONINE H - 648
1d8c_A_6321d8c   A     MSESELENOMETHIONINE A - 658
1d8c_A_6321d8c   A     MSESELENOMETHIONINE S - 659
1d8c_A_6321d8c   A     MSESELENOMETHIONINE L - 660
1d8c_A_6321d8c   A     MSESELENOMETHIONINE E - 661
1dnp_A_2381dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 238
1dnp_A_2381dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 239
1dnp_A_2381dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 241
1dnp_A_2381dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 242
1ikt_A_761ikt   A     OXNOXTOXYNOL-10 F - 79
1ikt_A_761ikt   A     OXNOXTOXYNOL-10 V - 82
1ikt_A_761ikt   A     OXNOXTOXYNOL-10 V - 83
1ikt_A_761ikt   A     OXNOXTOXYNOL-10 P - 89
1ikt_A_761ikt   A     OXNOXTOXYNOL-10 Q - 90
1ikt_A_761ikt   A     OXNOXTOXYNOL-10 F - 93
1ikt_A_761ikt   A     OXNOXTOXYNOL-10 F - 94
1ire_B_281ire   B     CEAS-HYDROXY-CYSTEINE L - 48
1ire_B_281ire   B     CSD3-SULFINOALANINE F - 51
1ire_B_281ire   B     CSD3-SULFINOALANINE R - 52
1ire_B_281ire   B     CEAS-HYDROXY-CYSTEINE R - 52
1ire_B_281ire   B     COCOBALT (II) ION R - 52
1ire_B_281ire   B     CSD3-SULFINOALANINE E - 56
1ire_B_681ire   B     CSD3-SULFINOALANINE Y - 68
1j1n_A_4281j1n   A     MAVD-MANNURONIC ACID R - 442
1l6s_A_2721l6s   A     DSB4,7-DIOXOSEBACIC ACID S - 272
1l6s_A_2721l6s   A     DSB4,7-DIOXOSEBACIC ACID G - 273
1n3l_A_2921n3l   A     GOLGLYCEROL Y - 292
1np7_A_2531np7   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 253
1np7_A_2531np7   A     FADFLAVIN-ADENINE DINUCLEOTIDE P - 254
1np7_A_2531np7   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 256
1np7_A_2531np7   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 257
1odo_A_2621odo   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 283
1paq_A_6511paq   A     MSESELENOMETHIONINE L - 655
1paq_A_6511paq   A     MSESELENOMETHIONINE L - 659
1paq_A_6511paq   A     MSESELENOMETHIONINE L - 662
1paq_A_6511paq   A     MSESELENOMETHIONINE I - 668
1paq_A_6511paq   A     MSESELENOMETHIONINE V - 672
1paq_A_6511paq   A     MSESELENOMETHIONINE I - 673
1paq_A_6511paq   A     MSESELENOMETHIONINE W - 676
1paq_A_6511paq   A     MSESELENOMETHIONINE W - 677
1qs0_A_3351qs0   A     MSESELENOMETHIONINE P - 335
1qs0_A_3351qs0   A     MSESELENOMETHIONINE I - 336
1qs0_A_3351qs0   A     MSESELENOMETHIONINE R - 338
1qs0_A_3351qs0   A     MSESELENOMETHIONINE L - 339
1qs0_A_3351qs0   A     MSESELENOMETHIONINE K - 340
1qs0_A_3351qs0   A     MSESELENOMETHIONINE Q - 341
1qs0_A_3351qs0   A     MSESELENOMETHIONINE L - 343
1qs0_A_3351qs0   A     MSESELENOMETHIONINE W - 349
1qs0_A_3351qs0   A     MSESELENOMETHIONINE H - 354
1qs0_A_3351qs0   A     MSESELENOMETHIONINE T - 357
1qs0_A_3351qs0   A     MSESELENOMETHIONINE F - 361
1qs0_A_3351qs0   A     MSESELENOMETHIONINE V - 365
1qs0_A_3351qs0   A     MSESELENOMETHIONINE Q - 369
2ahj_B_352ahj   B     NONITROGEN OXIDE Y - 37
2ahj_B_352ahj   B     DIO1,4-DIETHYLENE DIOXIDE Y - 37
2ahj_B_352ahj   B     DIO1,4-DIETHYLENE DIOXIDE M - 40
2ahj_B_352ahj   B     DIO1,4-DIETHYLENE DIOXIDE V - 52
2ahj_B_352ahj   B     DIO1,4-DIETHYLENE DIOXIDE V - 55
2ahj_B_352ahj   B     CSD3-SULFINOALANINE R - 56
2ahj_B_352ahj   B     CEAS-HYDROXY-CYSTEINE R - 56
2ahj_B_352ahj   B     FEFE (III) ION R - 56
2ahj_B_352ahj   B     NONITROGEN OXIDE R - 56
2ahj_B_352ahj   B     DIO1,4-DIETHYLENE DIOXIDE R - 56
2ahj_B_722ahj   B     CSD3-SULFINOALANINE Y - 72
2ahj_B_722ahj   B     NONITROGEN OXIDE Y - 72
2ahj_B_722ahj   B     DIO1,4-DIETHYLENE DIOXIDE Y - 72
2ahj_B_722ahj   B     CSD3-SULFINOALANINE R - 75
2ahj_B_722ahj   B     CSD3-SULFINOALANINE Y - 76
2ahj_B_722ahj   B     FEFE (III) ION Y - 76
2ahj_B_722ahj   B     NONITROGEN OXIDE Y - 76
2ahj_B_722ahj   B     DIO1,4-DIETHYLENE DIOXIDE Y - 76

Clusters included in this Subclass
CLUSTER: HH.3.128
CLUSTER: HH.4.21
CLUSTER: HH.5.12
CLUSTER: HH.5.201
CLUSTER: HH.6.67