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Information on SUBCLASS 4.1.3
Subclass Accession number: 2363
Subclass: 4.1.3 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0016829 (>50 %)  
Number of loops: 20

Average sequence ID (%) : 10.1 +/- 12.8
Average RMSD (Å) : 0.635 +/- 0.280

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXXXhpXX
(φψ)-conformation: aalabpaa
Pattern: [adeknqr]x[aflvy][adegknqrs]x[degnrs]x[ilmv][dehknpst]xxx[afgilmvwy]x
Conservation:0.021-0.1910.313-0.303-0.8671.841-0.8391.8211.000-1.030-1.420-0.0400.341-0.644
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c1k_A_1461c1k   A149162KLLQSNIISFETFIHHHHTTSS-HHHHHaaaaavabxaaaaa
1dqs_A_2871dqs   A301314LARHLGILKGVAVSHHHHTTSS-HHHHHaaaaavabxaaaaa
1e2h_A_1711e2h   A175188ARYLMGSMTPQAVLHHHHTTSS-HHHHHaaaaavabxaaaaa
1e2h_A_961e2h   A105118HRLDQGEISAGDAAHHHHTTSS-HHHHHaaaaavabxaaaaa
1ek9_A_3601ek9   A360373AGYSVGTRTIVDVLHHHHTTSS-HHHHHaaaaavabbaaaaa
1ezf_A_1771ezf   A186199LFSASEFEDPLVGEHHHHHTSS-HHHHHaaaaavabpaaaaa
1g5t_A_1291g5t   A131144YMVAYDYLPLEEVIHHHHTTSS-HHHHHaaaaalabxaaaaa
1h6k_A_1211h6k   A133146DLVNCHVIAAPSMVHHHHTTSB-HHHHHaaaaavabxaaaaa
1j0h_A_3771j0h   A385398RFFAKEEISARQFAHHHTS--S-HHHHHaaaaalabxaaaaa
1j97_A_321j97   A4053KEAMEGKLNFEQSLHHHHTTSS-HHHHHaaaaavabxaaaaa
1ji2_A_3741ji2   A382395RFFATGEIHAERFDHHHTS--S-HHHHHaaaaavabxaaaaa
1l8a_A_8451l8a   A855868ELAKRGEIDKKVVAHHHHTTSS-HHHHHaaaaavabxaaaaa
1oe0_A_1141oe0   A117130NMRRNGSLEQGMYNHHHHTTSS-HHHHHaaaaavabxaaaaa
1p5z_B_1371p5z   B140153NLYESECMNETEWTHHHHTTSS-HHHHHaaaaavabxaaaaa
1p6x_A_731p6x   A8295NRKQQGNLAVDDAAHHHHHTSS-HHHHHaaaaagabxaaaaa
1pam_A_2831pam   A291304QVFRDNTDNMYGLKHHHTT-SS-HHHHHaaaaalabbaaaaa
1q5n_A_201q5n   A3750AQAQVGVIPQSAATHHHHTTSS-HHHHHaaaaavabxaaaaa
1qho_A_2841qho   A292305NVFGTFTQTMYDLNHHHTS-SS-HHHHHaaaaavabbaaaaa
1uw4_B_8651uw4   B877890ELYNYRMVESAVIFHHHHTTSS-HHHHHaaaaavabxaaaaa
1v74_B_51v74   B1124KLFLASKITAIEFSHHHHTTSS-HHHHHaaaaavabxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dqs_A_2871dqs   A     ZNZINC ION H - 287
1dqs_A_2871dqs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE H - 287
1dqs_A_2871dqs   A     CRB[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID H - 287
1dqs_A_2871dqs   A     ZNZINC ION V - 291
1dqs_A_2871dqs   A     CRB[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID V - 291
1ek9_A_3601ek9   A     MSESELENOMETHIONINE A - 360
1ek9_A_3601ek9   A     MSESELENOMETHIONINE G - 361
1ek9_A_3601ek9   A     MSESELENOMETHIONINE Y - 362
1ek9_A_3601ek9   A     MSESELENOMETHIONINE S - 363
1ek9_A_3601ek9   A     MSESELENOMETHIONINE R - 367
1ek9_A_3601ek9   A     MSESELENOMETHIONINE T - 368
1ek9_A_3601ek9   A     MSESELENOMETHIONINE V - 370
1ek9_A_3601ek9   A     MSESELENOMETHIONINE D - 371
1ek9_A_3601ek9   A     MSESELENOMETHIONINE V - 372
1ek9_A_3601ek9   A     MSESELENOMETHIONINE D - 374
1ek9_A_3601ek9   A     MSESELENOMETHIONINE A - 375
1ezf_A_1771ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID G - 177
1ezf_A_1771ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID V - 179
1ezf_A_1771ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID G - 180
1ezf_A_1771ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID I - 181
1ezf_A_1771ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID L - 183
1ezf_A_1771ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID F - 187
1g5t_A_1291g5t   A     MGMAGNESIUM ION Y - 131
1g5t_A_1291g5t   A     ATPADENOSINE-5'-TRIPHOSPHATE Y - 131
1j97_A_321j97   A     BFDASPARTATE BERYLLIUM TRIFLUORIDE M - 43
1j97_A_321j97   A     MGMAGNESIUM ION M - 43
1j97_A_321j97   A     BFDASPARTATE BERYLLIUM TRIFLUORIDE F - 49
1oe0_A_1141oe0   A     TTPTHYMIDINE-5'-TRIPHOSPHATE F - 114
1oe0_A_1141oe0   A     TTPTHYMIDINE-5'-TRIPHOSPHATE V - 115
1oe0_A_1141oe0   A     TTPTHYMIDINE-5'-TRIPHOSPHATE M - 118
1p5z_B_1371p5z   B     AR3CYTARABINE F - 137
1p5z_B_1371p5z   B     AR3CYTARABINE A - 138
1p5z_B_1371p5z   B     AR3CYTARABINE L - 141
1p6x_A_731p6x   A     THMTHYMIDINE I - 74
1p6x_A_731p6x   A     THMTHYMIDINE I - 77
1p6x_A_731p6x   A     THMTHYMIDINE Y - 78
1p6x_A_731p6x   A     THMTHYMIDINE Q - 102
1p6x_A_731p6x   A     THMTHYMIDINE F - 105
1p6x_A_731p6x   A     THMTHYMIDINE T - 106
1p6x_A_731p6x   A     THMTHYMIDINE Y - 109
1qho_A_2841qho   A     ABDACARBOSE DERIVED HEXASACCHARIDE T - 288
1qho_A_2841qho   A     MALMALTOSE Y - 302

Clusters included in this Subclass
CLUSTER: HH.4.63
CLUSTER: HH.5.33
CLUSTER: HH.6.10