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Information on SUBCLASS 4.1.4
Subclass Accession number: 2364
Subclass: 4.1.4 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 15

Average sequence ID (%) : 11.3 +/- 13.0
Average RMSD (Å) : 0.560 +/- 0.285

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXcXhXhp
(φψ)-conformation: aalabpaa
Pattern: xx[filvw]xx[DGKN]x[cfiklmv][dhnprst][afilmpvy][deknqrs][adeknqrst][afilvy]x[adenqrs]
Conservation:-1.524-0.5871.099-0.401-0.9442.678-0.7140.736-0.115-0.3190.513-0.3290.434-0.125-0.401
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c1k_A_1461c1k   A149163KLLQSNIISFETFILHHHHTTSS-HHHHHHaaaaavabxaaaaaa
1c44_A_771c44   A8195LALMTGKMNPQSAFFHHHHTTSS-HHHHHHaaaaavabxaaaaaa
1dvp_A_231dvp   A3145DEINQKDVTPKNAFAHHHHTTSS-HHHHHHaaaaavabxaaaaaa
1g5t_A_1291g5t   A131145YMVAYDYLPLEEVISHHHHTTSS-HHHHHHaaaaalabxaaaaaa
1i7d_A_5691i7d   A579593TQISEKQCRYQDFMQHHHHTTSS-HHHHHHaaaaalabxaaaaaa
1iex_A_3211iex   A330344GHVNGGVIPMSRIDDHHHHTTSS-HHHHHHaaaaavabxaaaaaa
1ikt_A_761ikt   A8094MEVVLGKLDPQKAFFHHHHTTSS-HHHHHHaaaaavabxaaaaaa
1j1n_A_4281j1n   A450464QAWVMGTKDVDKTWDHHHHHTSS-HHHHHHaaaaavabxaaaaaa
1j1u_A_2701j1u   A275289SLFKNKELHPMDLKNHHHHTTSS-HHHHHHaaaaavabxaaaaaa
1jvn_A_5241jvn   A524538GMFHRGEFTVNDVKEHHHHTTS--HHHHHHaaaaavabbaaaaaa
1np7_A_2531np7   A254268PWLALGCLSPRFIYQHHHHTTSS-HHHHHHaaaaavabxaaaaaa
1ny5_A_2831ny5   A285299ELVKEGKFREDLYYRHHHHTTSS-HHHHHHaaaaavabxaaaaaa
1owl_A_2441owl   A245259PALKFGAIGIRQAWQHHHHTTSS-HHHHHHaaaaavabxaaaaaa
1pz4_A_681pz4   A7286FAIGTGALPAKEAMAHHHHTTSS-HHHHHHaaaaavabxaaaaaa
1qsa_A_1381qsa   A145159VWRASGKQDPLAYLEHHHHTT-S-HHHHHHaaaaavaxxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1g5t_A_1291g5t   A     MGMAGNESIUM ION Y - 131
1g5t_A_1291g5t   A     ATPADENOSINE-5'-TRIPHOSPHATE Y - 131
1ikt_A_761ikt   A     OXNOXTOXYNOL-10 F - 79
1ikt_A_761ikt   A     OXNOXTOXYNOL-10 V - 82
1ikt_A_761ikt   A     OXNOXTOXYNOL-10 V - 83
1ikt_A_761ikt   A     OXNOXTOXYNOL-10 P - 89
1ikt_A_761ikt   A     OXNOXTOXYNOL-10 Q - 90
1ikt_A_761ikt   A     OXNOXTOXYNOL-10 F - 93
1ikt_A_761ikt   A     OXNOXTOXYNOL-10 F - 94
1j1n_A_4281j1n   A     MAVD-MANNURONIC ACID R - 442
1np7_A_2531np7   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 253
1np7_A_2531np7   A     FADFLAVIN-ADENINE DINUCLEOTIDE P - 254
1np7_A_2531np7   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 256
1np7_A_2531np7   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 257
1owl_A_2441owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 244
1owl_A_2441owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE P - 245
1owl_A_2441owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 247
1owl_A_2441owl   A     PO4PHOSPHATE ION K - 248
1owl_A_2441owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE K - 248
1owl_A_2441owl   A     PO4PHOSPHATE ION F - 249
1pz4_A_681pz4   A     PLMPALMITIC ACID M - 71
1pz4_A_681pz4   A     PLMPALMITIC ACID I - 74
1pz4_A_681pz4   A     PLMPALMITIC ACID G - 75
1pz4_A_681pz4   A     PLMPALMITIC ACID A - 81
1qsa_A_1381qsa   A     GOLGLYCEROL L - 155
1qsa_A_1381qsa   A     GOLGLYCEROL L - 158

Clusters included in this Subclass
CLUSTER: HH.4.53
CLUSTER: HH.5.128
CLUSTER: HH.5.37
CLUSTER: HH.6.18