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Information on SUBCLASS 4.2.1
Subclass Accession number: 2370
Subclass: 4.2.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 48370 (>50 %)  53705 (>75 %)  53706 (>75 %)  53707 (>75 %)  
Number of loops: 18

Average sequence ID (%) : 13.4 +/- 14.3
Average RMSD (Å) : 1.039 +/- 0.327

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 45-90 rho (°): 180-225
Consensus Sequence: XXGXpphp
(φψ)-conformation: aalpabaa
Pattern: x[ehknqrt][afiklmv]x[dekqrty]xx[GKQR][filtvw][DEGKNRST][DGKNST]x[denqrsty]x[ailtv]
Conservation:-0.5720.176-0.606-0.578-0.111-0.745-0.9763.031-0.4500.5800.940-0.772-0.081-0.2320.395
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a04_A_1841a04   A192206KHMLKKMKLKSRVEAHHHHHHHT--SHHHHaaaaaaalbabaaaa
1aih_A_2971aih   A298312LVLKEILGHSTIEMTHHHHHHHT-SSHHHHaaaaaaavxabaaaa
1b4f_A_271b4f   A2741KESFANAGFTSFDVVHHHHHHTT--SHHHHaaaaaaavxabaaaa
1bpy_A_1081bpy   A111125ARKFVDEGIKTLEDLHHHHHHTT--SHHHHaaaaaaavxNbaaaa
1ci4_A_281ci4   A3145GKKLEERGFDKAYVVHHHHHHTT--SHHHHaaaaaaavxabaaaa
1d3g_A_3651d3g   A375389EALLKEQGFGGVTDAHHHHHHTT-SSHHHHaaaaaaavxabaaaa
1eb6_A_371eb6   A3852SKFEEYFKTTDQQTRHHHHHHHS---HHHHaaaaaaavbaxaaaa
1ep3_A_2791ep3   A288302PELMDQYRIESLESLHHHHHHTT-S-HHHHaaaaaaalbabaaaa
1f44_A_3061f44   A307321PEIMQAGGWTNVNIVHHHHHHHT---HHHHaaaaaaavxabaaaa
1fse_A_401fse   A4862SNAMQKLGVKGRSQAHHHHHHHT-SSHHHHaaaaaaavbabaaaa
1i8t_A_971i8t   A98112NTFHQMWGVKDPQEAHHHHHHH----HHHHaaaaaaavxaxaaaa
1ile_*_881ile   -93107LEVEKKLGLKSKREIHHHHHHTT--SHHHHaaaaaaavxabaaaa
1jms_A_2601jms   A263277AEKWFRMGFRTLSKIHHHHHHTT--SHHHHaaaaaaagxabaaaa
1nqe_A_311nqe   A3145RQDIDRWQSTSVNDVHHHHHHHT-SSHHHHaaaaaaavpabaaaa
1qh5_A_2301qh5   A230244KTVQQHAGETDPVTTHHHHHHHT-SSHHHHaaaaaaavbabaaaa
1r7i_A_3361r7i   A339353QLSLRILGVKTAQALHHHHHHHT--SHHHHaaaaaaavxabaaaa
1rzt_A_3461rzt   A349363AQMWYQQGFRSLEDIHHHHHHTT--SHHHHaaaaaaavxabaaaa
1vk4_A_1741vk4   A175189REAETLTGTNDLRESHHHHHHHS-S-HHHHaaaaaaavbaxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ci4_A_281ci4   A     MSESELENOMETHIONINE A - 42
1ci4_A_281ci4   A     MSESELENOMETHIONINE Y - 43
1ci4_A_281ci4   A     MSESELENOMETHIONINE V - 44
1ci4_A_281ci4   A     MSESELENOMETHIONINE L - 46
1ile_*_881ile   *     ZNZINC ION L - 89
1ile_*_881ile   *     ZNZINC ION L - 93
1qh5_A_2301qh5   A     GTTGLUTATHIONE R - 249
1qh5_A_2301qh5   A     GTTGLUTATHIONE K - 252
1qh5_A_2301qh5   A     GTTGLUTATHIONE D - 253
1r7i_A_3361r7i   A     GOLGLYCEROL L - 342
1r7i_A_3361r7i   A     GOLGLYCEROL R - 343
1r7i_A_3361r7i   A     GOLGLYCEROL I - 344
1r7i_A_3361r7i   A     GOLGLYCEROL G - 346
1r7i_A_3361r7i   A     GOLGLYCEROL V - 347
1r7i_A_3361r7i   A     GOLGLYCEROL K - 348
1r7i_A_3361r7i   A     GOLGLYCEROL Q - 364
1r7i_A_3361r7i   A     GOLGLYCEROL N - 365
1r7i_A_3361r7i   A     GOLGLYCEROL A - 368
1r7i_A_3361r7i   A     GOLGLYCEROL M - 369
1r7i_A_3361r7i   A     GOLGLYCEROL L - 372

Clusters included in this Subclass
CLUSTER: HH.3.66
CLUSTER: HH.4.134
CLUSTER: HH.4.35
CLUSTER: HH.5.129
CLUSTER: HH.5.32
CLUSTER: HH.6.43