Information on SUBCLASS 4.2.1 |
Subclass Accession number: 2370
Subclass: 4.2.1 Type: HH alpha-alpha DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation SCOP : 48370 (>50 %) 53705 (>75 %) 53706 (>75 %) 53707 (>75 %) |
Number of loops: 18 Average sequence ID (%) : 13.4 +/- 14.3 Average RMSD (Å) : 1.039 +/- 0.327 Consensus geometry
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Consensus Sequence: | XXGXpphp |
(φψ)-conformation: | aalpabaa |
Pattern: | x | [ehknqrt] | [afiklmv] | x | [dekqrty] | x | x | [GKQR] | [filtvw] | [DEGKNRST] | [DGKNST] | x | [denqrsty] | x | [ailtv] |
Conservation: | -0.572 | 0.176 | -0.606 | -0.578 | -0.111 | -0.745 | -0.976 | 3.031 | -0.450 | 0.580 | 0.940 | -0.772 | -0.081 | -0.232 | 0.395 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a04_A_184 | 1a04 | A | 192 | 206 | KHMLKKMKLKSRVEA | HHHHHHHT--SHHHH | aaaaaaalbabaaaa |
1aih_A_297 | 1aih | A | 298 | 312 | LVLKEILGHSTIEMT | HHHHHHHT-SSHHHH | aaaaaaavxabaaaa |
1b4f_A_27 | 1b4f | A | 27 | 41 | KESFANAGFTSFDVV | HHHHHHTT--SHHHH | aaaaaaavxabaaaa |
1bpy_A_108 | 1bpy | A | 111 | 125 | ARKFVDEGIKTLEDL | HHHHHHTT--SHHHH | aaaaaaavxNbaaaa |
1ci4_A_28 | 1ci4 | A | 31 | 45 | GKKLEERGFDKAYVV | HHHHHHTT--SHHHH | aaaaaaavxabaaaa |
1d3g_A_365 | 1d3g | A | 375 | 389 | EALLKEQGFGGVTDA | HHHHHHTT-SSHHHH | aaaaaaavxabaaaa |
1eb6_A_37 | 1eb6 | A | 38 | 52 | SKFEEYFKTTDQQTR | HHHHHHHS---HHHH | aaaaaaavbaxaaaa |
1ep3_A_279 | 1ep3 | A | 288 | 302 | PELMDQYRIESLESL | HHHHHHTT-S-HHHH | aaaaaaalbabaaaa |
1f44_A_306 | 1f44 | A | 307 | 321 | PEIMQAGGWTNVNIV | HHHHHHHT---HHHH | aaaaaaavxabaaaa |
1fse_A_40 | 1fse | A | 48 | 62 | SNAMQKLGVKGRSQA | HHHHHHHT-SSHHHH | aaaaaaavbabaaaa |
1i8t_A_97 | 1i8t | A | 98 | 112 | NTFHQMWGVKDPQEA | HHHHHHH----HHHH | aaaaaaavxaxaaaa |
1ile_*_88 | 1ile | - | 93 | 107 | LEVEKKLGLKSKREI | HHHHHHTT--SHHHH | aaaaaaavxabaaaa |
1jms_A_260 | 1jms | A | 263 | 277 | AEKWFRMGFRTLSKI | HHHHHHTT--SHHHH | aaaaaaagxabaaaa |
1nqe_A_31 | 1nqe | A | 31 | 45 | RQDIDRWQSTSVNDV | HHHHHHHT-SSHHHH | aaaaaaavpabaaaa |
1qh5_A_230 | 1qh5 | A | 230 | 244 | KTVQQHAGETDPVTT | HHHHHHHT-SSHHHH | aaaaaaavbabaaaa |
1r7i_A_336 | 1r7i | A | 339 | 353 | QLSLRILGVKTAQAL | HHHHHHHT--SHHHH | aaaaaaavxabaaaa |
1rzt_A_346 | 1rzt | A | 349 | 363 | AQMWYQQGFRSLEDI | HHHHHHTT--SHHHH | aaaaaaavxabaaaa |
1vk4_A_174 | 1vk4 | A | 175 | 189 | REAETLTGTNDLRES | HHHHHHHS-S-HHHH | aaaaaaavbaxaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ci4_A_28 | 1ci4 | A | MSESELENOMETHIONINE | A - 42 |
1ci4_A_28 | 1ci4 | A | MSESELENOMETHIONINE | Y - 43 |
1ci4_A_28 | 1ci4 | A | MSESELENOMETHIONINE | V - 44 |
1ci4_A_28 | 1ci4 | A | MSESELENOMETHIONINE | L - 46 |
1ile_*_88 | 1ile | * | ZNZINC ION | L - 89 |
1ile_*_88 | 1ile | * | ZNZINC ION | L - 93 |
1qh5_A_230 | 1qh5 | A | GTTGLUTATHIONE | R - 249 |
1qh5_A_230 | 1qh5 | A | GTTGLUTATHIONE | K - 252 |
1qh5_A_230 | 1qh5 | A | GTTGLUTATHIONE | D - 253 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | L - 342 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | R - 343 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | I - 344 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | G - 346 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | V - 347 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | K - 348 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | Q - 364 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | N - 365 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | A - 368 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | M - 369 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | L - 372 |
Clusters included in this Subclass |
CLUSTER: HH.3.66 |
CLUSTER: HH.4.134 |
CLUSTER: HH.4.35 |
CLUSTER: HH.5.129 |
CLUSTER: HH.5.32 |
CLUSTER: HH.6.43 |