Logo
Information on SUBCLASS 4.2.3
Subclass Accession number: 2372
Subclass: 4.2.3 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : - (>75 %)  1 (>75 %)  
GO : GO:0004175 (>75 %)  GO:0005102 (>50 %)  GO:0005125 (>50 %)  GO:0005126 (>50 %)  GO:0005146 (>50 %)  GO:0008083 (>50 %)  GO:0008233 (>75 %)  
SCOP : 47265 (>50 %)  47266 (>50 %)  47267 (>50 %)  
 Number of loops: 4

Average sequence ID (%) : 9.4 +/- 10.9
Average RMSD (Å) : 0.825 +/- 0.386

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: pXXXXXhh
(φψ)-conformation: aalpabaa
Pattern: xxx[ILV][EQRS][ADQ][AQT][EKL][KQS]x[DGQ]xxxx[AFLY]
Conservation:-0.467-0.638-1.1672.2630.595-0.1380.326-0.7471.437-0.9900.5500.457-1.078-1.1670.873-0.109
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a1v_A_5441a1v   A544559AHFLSQTKQSGENFPYHHHHHHHHHTT-SSHHaaaaaaaaaavpabaa
1dxy_*_1201dxy   -120135MGKVQAQLQAGDYEKAHHHHHHHHHTT-HHHHaaaaaaaaaavbaaaa
1hk8_A_1321hk8   A145160AKHIEDAEKWQIADALHHHHHHHHHTT-SSHHaaaaaaaaaalxaxaa
1ukf_A_1261ukf   A139154NDALRAALSNDDEAPFHHHHHHHHHTT-SSHHaaaaaaaaaalxabaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a1v_A_5441a1v   A     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE L - 547
1a1v_A_5441a1v   A     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE K - 551
1a1v_A_5441a1v   A     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE Y - 559
1hk8_A_1321hk8   A     DGT2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE K - 146
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1hk8_A_1321hk8   A DG1DGT BINDING SITE FOR CHAIN AK - 146
1hk8_A_1321hk8   A DG1DGT BINDING SITE FOR CHAIN AK - 169

Clusters included in this Subclass
CLUSTER: HH.4.102