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Information on SUBCLASS 4.8.1
Subclass Accession number: 2386
Subclass: 4.8.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 12.8 +/- 14.9
Average RMSD (Å) : 0.883 +/- 0.306

Consensus geometry
d (Å): 15 delta (°): 45-90 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: pXhXhXpX
(φψ)-conformation: aapbppaa
Pattern: [filw][fgl][EKQT]x[GLTV][aegnq][LPW][dgnt][DKPR][DEGR][aeqs][eklm][AIKL]
Conservation:-0.202-0.9342.373-0.733-0.982-1.2390.460-0.5721.2100.3630.0620.460-0.265
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cv8_*_571cv8   -5971QFQFTGLTPREMIHHHH----HHHHHaaaaxxbxaaaaa
1hbn_C_651hbn   C6678IREMVEPIDGAKAHHHHS---HHHHHaaaabxxxaaaaa
1o0w_A_1031o0w   A103115LGKFLFLGKGEEKHHHH-B--HHHHHaaaaxbbxaaaaa
1qaz_A_231qaz   A2941FLQSGQLDDRLKAHHHSS---HHHHHaaaapbxxaaaaa
1ual_A_2211ual   A223235LLEGLALTDEQRKHHHT----HHHHHaaaabxxxaaaaa
1xyz_A_6061xyz   A607619WLTNGNWNRDSLLHHHTS---HHHHHaaaaxbbbaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cv8_*_571cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE F - 62
1cv8_*_571cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE T - 63
1cv8_*_571cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE G - 64
1cv8_*_571cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE L - 65
1cv8_*_571cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE T - 66
1cv8_*_571cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE P - 67
1cv8_*_571cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE E - 69
1cv8_*_571cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE M - 70
1hbn_C_651hbn   C     GOLGLYCEROL I - 73

Clusters included in this Subclass
CLUSTER: HH.4.226
CLUSTER: HH.5.72