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Information on SUBCLASS 3.8.1
Subclass Accession number: 239
Subclass: 3.8.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 17

Average sequence ID (%) : 11.7 +/- 13.9
Average RMSD (Å) : 0.906 +/- 0.222

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: pXXXXXh
(φψ)-conformation: aapapbb
Pattern: [dehkprs]x[cgilmv][eknqrs]xx[DEKPRS]xxx[filtvy]
Conservation:0.646-1.7150.9651.128-0.756-0.7961.218-1.159-0.2970.2690.497
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bs0_A_2861bs0   A304313AGVQDLPFTL.HHHTTSS-EE.aaaaababbb.
1bup_A_811bup   A8595SDMKHWPFMVVHHHTT-SSEEEaaaaaxaxxbb
1cbu_A_1041cbu   A120130AACQRCPAKVVHHHHH--SEEEaaaaaxaxxxb
1d3v_A_361d3v   A3848EKLKETEYNVRHHHTTSSS-EEaaaaaxaxxbb
1dlj_A_3301dlj   A336346DILKSKDIKIIHHHHTSS-EEEaaaaababxbb
1dqn_A_1091dqn   A113123KQLKEKREVVLHHHHH-SSEEEaaaaaxabbbx
1fc4_A_1371fc4   A141151DGVRLCKAKRYHHHHTS-SEEEaaaaaxapxbb
1imj_A_1631imj   A170180EHLKQLPNHRVHHHTTSSSEEEaaaaaxabbbb
1iup_A_2291iup   A234244RLGELIDRAQLHHHHH-TTEEEaaaaaxaxbbb
1j5p_A_861j5p   A94104SELKNSPARVFHHHHT-S-EEEaaaaaxaxbbb
1js1_X_1831js1   X190200EWMNATDYEFVHHHHTSSSEEEaaaaabaxxbb
1kic_A_1171kic   A123133DLVMNSEEKVTHHHHT-SS-EEaaaaaxaxxbx
1lxj_A_231lxj   A3141KKIRESPLKSTHHHHTSSSEEEaaaaaxaxxbb
1nye_D_7461nye   D746756PVSQVLKAEITHHHHH--SEEEaaaaaxaxxbb
1qmg_A_1861qmg   A188198ETISGSDLVLLHHHHT-SEEEEaaaaaxabbbx
1r0w_A_6071r0w   A608618EHLRKADKILIHHHHT-SEEEEaaaaaxabbbb
2mas_A_1732mas   A177187HIVFNESWQVTHHHHHSSS-EEaaaaaxaxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dqn_A_1091dqn   A     MGMAGNESIUM ION D - 125
1dqn_A_1091dqn   A     IMUPHOSPHORIC ACID MONO-[5-(2-AMINO-4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-3,4-DIHYDROXY-PYRROLIDIN -2-YLMETHYL] ESTER D - 125
1dqn_A_1091dqn   A     POPPYROPHOSPHATE 2- D - 125
1dqn_A_1091dqn   A     MGMAGNESIUM ION E - 126
1dqn_A_1091dqn   A     IMUPHOSPHORIC ACID MONO-[5-(2-AMINO-4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-3,4-DIHYDROXY-PYRROLIDIN -2-YLMETHYL] ESTER E - 126
1dqn_A_1091dqn   A     POPPYROPHOSPHATE 2- E - 126
1dqn_A_1091dqn   A     MGMAGNESIUM ION Y - 127
1dqn_A_1091dqn   A     IMUPHOSPHORIC ACID MONO-[5-(2-AMINO-4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-3,4-DIHYDROXY-PYRROLIDIN -2-YLMETHYL] ESTER Y - 127
1dqn_A_1091dqn   A     IMUPHOSPHORIC ACID MONO-[5-(2-AMINO-4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-3,4-DIHYDROXY-PYRROLIDIN -2-YLMETHYL] ESTER V - 128
1fc4_A_1371fc4   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 138
1fc4_A_1371fc4   A     MSESELENOMETHIONINE I - 139
1fc4_A_1371fc4   A     PLPPYRIDOXAL-5'-PHOSPHATE I - 139
1fc4_A_1371fc4   A     MSESELENOMETHIONINE Y - 153
1lxj_A_231lxj   A     MSESELENOMETHIONINE F - 25
1lxj_A_231lxj   A     MSESELENOMETHIONINE V - 26
1lxj_A_231lxj   A     MSESELENOMETHIONINE I - 29
1lxj_A_231lxj   A     MSESELENOMETHIONINE I - 33
1qmg_A_1861qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE M - 186
1qmg_A_1861qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE W - 187
1qmg_A_1861qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE L - 198

Clusters included in this Subclass
CLUSTER: HE.3.82
CLUSTER: HE.4.19
CLUSTER: HE.5.90
CLUSTER: HE.6.68