ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.10.1

Subclass Accession number: 243
Subclass: 3.10.1

PSSM

Type: HE alpha-beta
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 16

Average sequence ID (%) : 13.8 +/- 14.6
Average RMSD (Å) : 0.725 +/- 0.304

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	XXcXXhX
(φψ)-conformation:	aagbpbb

Pattern:	x	[degknqst]	x	[fily]	[aegkqrst]	[adekqrs]	[aiktv]	x	[GNR]	x	x	[AFGIPVY]	x	[filptv]	x
Conservation:	-0.709	-0.023	-0.459	1.404	-0.539	-0.358	0.030	-0.781	2.887	-0.388	-0.697	0.289	-0.411	-0.244	-1.000

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1avq_A_75	1avq	A	89	101	RTLFEFTSGVNVT..	HHHHHHHH---EE..	aaaaaaaavbxbb..
1bol_A_163	1bol	A	167	181	QSAIESYFGAKAKID	HHHHHHHHSS--EEE	aaaaaaaavbxbbbb
1dj0_A_35	1dj0	A	40	54	EKALSQVANEPITVF	HHHHHHHHTS---EE	aaaaaaaavbwbbbb
1fy7_A_316	1fy7	A	324	337	SYELSKKENKVGSP.	HHHHHHHTT--BEE.	aaaaaaaavbxbbx.
1iq4_A_47	1iq4	A	54	68	VEELTLIAGQRPVVT	HHHHHHHHSS--EEE	aaaaaaaavbxxbxx
1iyb_A_141	1iyb	A	145	159	KNAIRSAIGYAPGIE	HHHHHHHHSS--EEE	aaaaaaaavbxxbbb
1jj2_D_38	1jj2	D	38	51	EDILGEITGQMPVR.	HHHHHHHHSS--EE.	aaaaaaaagbpxbp.
1jy5_A_151	1jy5	A	155	169	MSAIQSALRVTPVVK	HHHHHHHHSS--EEE	aaaaaaaavbxxbbb
1kfw_A_210	1kfw	A	225	239	LDAYGSTNNKKYVLS	HHHHHHHTT---EEE	aaaaaaaalbbxbbb
1p8x_A_585	1p8x	A	591	605	AQELLRVLRAQPVQV	HHHHHHHTT---EEE	aaaaaaaalbxxxxb
1pie_A_363	1pie	A	371	385	GQVYEEVVGYPASFY	HHHHHHHHSS--EEE	aaaaaaaavbbxbbb
1s9r_A_315	1s9r	A	316	330	EGLLQSIINKKPVLI	HHHHHHHHSS--EEE	aaaaaaaavbxxbbb
1squ_A_3	1squ	A	14	27	YETIRDVLGIEPKT.	HHHHHHTTS---EE.	aaaaaaaavbxbbx.
1uca_A_132	1uca	A	136	150	KGFLKAKFGKFPGLR	HHHHHHHHSS--EEE	aaaaaaaavbxxbbb
1vdk_A_242	1vdk	A	247	260	AKYLAEETGLPFRV.	HHHHHHHHSS--EE.	aaaaaaaavbwxbx.
1vrt_A_364	1vrt	A	376	390	TTESIVIWGKTPKFK	HHHHHHHHSS--EEE	aaaaaaaavbxxxxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1fy7_A_316	1fy7	A	COACOENZYME A	Y - 316
1fy7_A_316	1fy7	A	COACOENZYME A	G - 317
1fy7_A_316	1fy7	A	COACOENZYME A	K - 318
1fy7_A_316	1fy7	A	COACOENZYME A	L - 319
1fy7_A_316	1fy7	A	COACOENZYME A	L - 320
1kfw_A_210	1kfw	A	GOLGLYCEROL	F - 241
1p8x_A_585	1p8x	A	CACALCIUM ION	E - 587

Clusters included in this Subclass

CLUSTER: HE.3.39

CLUSTER: HE.4.18

CLUSTER: HE.5.11