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Information on SUBCLASS 5.3.1
Subclass Accession number: 2440
Subclass: 5.3.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 17

Average sequence ID (%) : 13.0 +/- 14.4
Average RMSD (Å) : 0.812 +/- 0.300

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XXXXXhpXX
(φψ)-conformation: aalppppaa
Pattern: x[afiklmv]xxx[gkns][aegkqs][adeknrst][ILMPTV][DENPST][adeknqt][adenps]xx
Conservation:-0.767-0.326-0.644-0.953-0.3722.517-0.356-0.1691.4931.204-0.451-0.434-0.438-0.302
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aky_*_481aky   -5568KIMDQGGLVSDDIMHHHHTT----HHHHaaaaavxbxpaaaa
1aw9_*_1201aw9   -120133VRPLLGGAPDAAVVHHHHTT----HHHHaaaaavbxpxaaaa
1brw_A_31brw   A821AKKRDGKALTKEEIHHHHTT----HHHHaaaaavxxxxaaaa
1gnw_A_1231gnw   A123136FKSIYGLTTDEAVVHHHHTT----HHHHaaaaavxxxxaaaa
1i5n_A_1001i5n   A103116DAYKNSEEPDAASFHHHHTT----HHHHaaaaalbxxxaaaa
1khd_A_141khd   A1831EKLFKSQSMTQEESHHHHTT----HHHHaaaaavbxxxaaaa
1knq_A_451knq   A4962EKMASGEPLNDDDRHHHHTT----HHHHaaaaavbxxbaaaa
1m1e_B_111m1e   B2538MLRKMGSNLTASEEHHHHTT----HHHHaaaaavxxbxaaaa
1nd7_A_6801nd7   A683696YKRMLSKKLTIKDLHHHHTT----HHHHaaaaavbxxbaaaa
1ng4_A_3351ng4   A343356SDLIMNKEVNQDWLHHHHTT----HHHHaaaaavxxbpaaaa
1nm8_A_4961nm8   A505518QAIEDLVSTPDIFMHHHHTT----HHHHaaaaavbxpwaaaa
1nst_A_8421nst   A862875LLYKMGQTLPTWLRHHHHHT----HHHHaaaaavxxxxaaaa
1o17_A_31o17   A821KKLINKSDLEINEAHHHHTT----HHHHaaaaalbxxxaaaa
1qjb_A_191qjb   A2841SVTEQGAELSNEERHHHHT-----HHHHaaaaavxpxxaaaa
1uou_A_361uou   A4154RMKRDGGRLSEADIHHHHTT----HHHHaaaaavxxxxaaaa
2ak3_A_492ak3   A5669TFIDQGKLIPDDVMHHHHTT----HHHHaaaaalbxxwaaaa
4ubp_A_54ubp   A2235RRKARGLKLNYPEAHHHHTT--B-HHHHaaaaagxxxbaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE A - 53
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE I - 56
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE M - 57
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE D - 58
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 60
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 61
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE L - 62
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE V - 63
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE S - 64
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE D - 65
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE M - 68
1aw9_*_1201aw9   *     CDCADMIUM ION E - 138
1aw9_*_1201aw9   *     CDCADMIUM ION K - 142
1aw9_*_1201aw9   *     CDCADMIUM ION H - 150
1aw9_*_1201aw9   *     CDCADMIUM ION L - 151
1aw9_*_1201aw9   *     CDCADMIUM ION A - 152
1aw9_*_1201aw9   *     CDCADMIUM ION R - 153
1gnw_A_1231gnw   A     GTXS-HEXYLGLUTATHIONE F - 123
1gnw_A_1231gnw   A     GTXS-HEXYLGLUTATHIONE I - 126
1gnw_A_1231gnw   A     GTXS-HEXYLGLUTATHIONE Y - 127
1gnw_A_1231gnw   A     GTXS-HEXYLGLUTATHIONE K - 142
1i5n_A_1001i5n   A     MSESELENOMETHIONINE E - 100
1i5n_A_1001i5n   A     MSESELENOMETHIONINE Q - 101
1i5n_A_1001i5n   A     MSESELENOMETHIONINE L - 102
1i5n_A_1001i5n   A     MSESELENOMETHIONINE D - 103
1i5n_A_1001i5n   A     MSESELENOMETHIONINE L - 123
1i5n_A_1001i5n   A     MSESELENOMETHIONINE L - 126
1i5n_A_1001i5n   A     MSESELENOMETHIONINE A - 127
1i5n_A_1001i5n   A     MSESELENOMETHIONINE A - 130
1qjb_A_191qjb   A     SEPPHOSPHOSERINE K - 49
1qjb_A_191qjb   A     SEPPHOSPHOSERINE R - 56
1qjb_A_191qjb   A     SEPPHOSPHOSERINE R - 60
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE F - 57
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE I - 58
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE G - 61
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE K - 62
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE L - 63
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE I - 64
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE P - 65
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE D - 66
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE M - 69

Clusters included in this Subclass
CLUSTER: HH.6.6
CLUSTER: HH.7.1