Information on SUBCLASS 5.3.1 |
Subclass Accession number: 2440
Subclass: 5.3.1 Type: HH alpha-alpha DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 17 Average sequence ID (%) : 13.0 +/- 14.4 Average RMSD (Å) : 0.812 +/- 0.300 Consensus geometry
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Consensus Sequence: | XXXXXhpXX |
(φψ)-conformation: | aalppppaa |
Pattern: | x | [afiklmv] | x | x | x | [gkns] | [aegkqs] | [adeknrst] | [ILMPTV] | [DENPST] | [adeknqt] | [adenps] | x | x |
Conservation: | -0.767 | -0.326 | -0.644 | -0.953 | -0.372 | 2.517 | -0.356 | -0.169 | 1.493 | 1.204 | -0.451 | -0.434 | -0.438 | -0.302 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1aky_*_48 | 1aky | - | 55 | 68 | KIMDQGGLVSDDIM | HHHHTT----HHHH | aaaaavxbxpaaaa |
1aw9_*_120 | 1aw9 | - | 120 | 133 | VRPLLGGAPDAAVV | HHHHTT----HHHH | aaaaavbxpxaaaa |
1brw_A_3 | 1brw | A | 8 | 21 | AKKRDGKALTKEEI | HHHHTT----HHHH | aaaaavxxxxaaaa |
1gnw_A_123 | 1gnw | A | 123 | 136 | FKSIYGLTTDEAVV | HHHHTT----HHHH | aaaaavxxxxaaaa |
1i5n_A_100 | 1i5n | A | 103 | 116 | DAYKNSEEPDAASF | HHHHTT----HHHH | aaaaalbxxxaaaa |
1khd_A_14 | 1khd | A | 18 | 31 | EKLFKSQSMTQEES | HHHHTT----HHHH | aaaaavbxxxaaaa |
1knq_A_45 | 1knq | A | 49 | 62 | EKMASGEPLNDDDR | HHHHTT----HHHH | aaaaavbxxbaaaa |
1m1e_B_11 | 1m1e | B | 25 | 38 | MLRKMGSNLTASEE | HHHHTT----HHHH | aaaaavxxbxaaaa |
1nd7_A_680 | 1nd7 | A | 683 | 696 | YKRMLSKKLTIKDL | HHHHTT----HHHH | aaaaavbxxbaaaa |
1ng4_A_335 | 1ng4 | A | 343 | 356 | SDLIMNKEVNQDWL | HHHHTT----HHHH | aaaaavxxbpaaaa |
1nm8_A_496 | 1nm8 | A | 505 | 518 | QAIEDLVSTPDIFM | HHHHTT----HHHH | aaaaavbxpwaaaa |
1nst_A_842 | 1nst | A | 862 | 875 | LLYKMGQTLPTWLR | HHHHHT----HHHH | aaaaavxxxxaaaa |
1o17_A_3 | 1o17 | A | 8 | 21 | KKLINKSDLEINEA | HHHHTT----HHHH | aaaaalbxxxaaaa |
1qjb_A_19 | 1qjb | A | 28 | 41 | SVTEQGAELSNEER | HHHHT-----HHHH | aaaaavxpxxaaaa |
1uou_A_36 | 1uou | A | 41 | 54 | RMKRDGGRLSEADI | HHHHTT----HHHH | aaaaavxxxxaaaa |
2ak3_A_49 | 2ak3 | A | 56 | 69 | TFIDQGKLIPDDVM | HHHHTT----HHHH | aaaaalbxxwaaaa |
4ubp_A_5 | 4ubp | A | 22 | 35 | RRKARGLKLNYPEA | HHHHTT--B-HHHH | aaaaagxxxbaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Clusters included in this Subclass |
CLUSTER: HH.6.6 |
CLUSTER: HH.7.1 |