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Information on SUBCLASS 5.3.2
Subclass Accession number: 2441
Subclass: 5.3.2 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 2.7.4 (>75 %)  
GO : GO:0016301 (>75 %)  GO:0016776 (>75 %)  GO:0019205 (>75 %)  
SCOP : 52539 (>50 %)  52540 (>50 %)  52541 (>50 %)  
Number of loops: 5

Average sequence ID (%) : 12.5 +/- 14.7
Average RMSD (Å) : 0.960 +/- 0.336

Consensus geometry
d (Å): 17 delta (°): 90-135 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: ppcXXhXpX
(φψ)-conformation: aalppppaa
Pattern: [AIKL][AKL][qrt][AMY][IMVW][dek][DNQR][gl][adpv]x[ILTV][NPS][DPQS]x[FGLV][imt]
Conservation:-0.714-0.304-0.3000.0820.7610.0681.2640.359-1.110-1.8741.3931.8100.589-0.579-1.114-0.331
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cc1_L_3341cc1   L335350LARMWVQNPELSPVGQHHHHHHH--B--HHHHaaaaaaalwxxxaaaa
1nm8_A_4961nm8   A503518KLQAIEDLVSTPDIFMHHHHHHTT----HHHHaaaaaaavbxpwaaaa
1qf9_A_521qf9   A5570IATMIKNGEIVPSIVTHHHHHHTT----HHHHaaaaaaavxxxpaaaa
1qmg_A_5401qmg   A540555ALVAVDNGAPINQDLIHHHHHHTT----HHHHaaaaaaavpxxxaaaa
1zin_*_441zin   -4964AKQYMDRGDLVPDEVTHHHHHHHT----HHHHaaaaaaavxxxwaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE I - 55
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE M - 58
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE I - 59
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE K - 60
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE N - 61
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE G - 62
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE E - 63
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE I - 64
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE V - 65
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE P - 66
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE T - 70
1zin_*_441zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE A - 49
1zin_*_441zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE Y - 52
1zin_*_441zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE M - 53
1zin_*_441zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 56
1zin_*_441zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE D - 57
1zin_*_441zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE L - 58
1zin_*_441zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE V - 59
1zin_*_441zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE P - 60
1zin_*_441zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE D - 61
1zin_*_441zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE T - 64

Clusters included in this Subclass
CLUSTER: HH.5.135
CLUSTER: HH.6.47