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Information on SUBCLASS 5.4.2
Subclass Accession number: 2446
Subclass: 5.4.2 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 48370 (>75 %)  51569 (>75 %)  51570 (>75 %)  
Number of loops: 6

Average sequence ID (%) : 13.3 +/- 14.1
Average RMSD (Å) : 1.000 +/- 0.395

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XppXpIpXX
(φψ)-conformation: aapaappaa
Pattern: [CILW]x[PQST][cily][fltv][dkns][DEKNS]x[DKNQT][IV][DNST][aikv][eqwy][DEKQ][KL][afiv][dkpqr][gily][ILM]x[eknt][afly]
Conservation:0.178-0.6410.127-0.708-0.822-0.3450.646-0.392-0.0282.8930.918-0.660-0.5191.1850.531-0.698-0.700-1.1981.922-0.664-0.498-0.526
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1epu_A_3881epu   A388409IVPILLDQKISAYDKIRIILLYHHHHHT-TTS-HHHHHHHHHHHaaaaaabaaxxaaaaaaaaaaa
1ezf_A_641ezf   A79100LDTLEDDMTISVEKKVPLLHNFHHHHHH-TTS-HHHHHHHHHHHaaaaaaxaaxxaaaaaaaaaaa
1hf8_A_391hf8   A4566LIQCTNEMNVNIPQLADSLFERHHHHHT-TTS-HHHHHHHHHHHaaaaaaxaaxxaaaaaaaaaaa
1klx_A_291klx   A3051CLSLVSNSQINKQKLFQYLSKAHHHHHT-TTS-HHHHHHHHHHHaaaaaaxaabxaaaaaaaaaaa
1n5d_A_1511n5d   A153174LQQKFKSETITEEELVGLMNKFHHHHHS-SS--HHHHHHHHHHHaaaaaapaapbaaaaaaaaaaa
1v54_E_81v54   E1536WVTYFNKPDIDAWELRKGMNTLHHHHHT-TT--HHHHHHHHHHHaaaaaapaapxaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1epu_A_3881epu   A     MSESELENOMETHIONINE I - 388
1epu_A_3881epu   A     MSESELENOMETHIONINE V - 389
1epu_A_3881epu   A     MSESELENOMETHIONINE P - 390
1epu_A_3881epu   A     MSESELENOMETHIONINE L - 392
1epu_A_3881epu   A     MSESELENOMETHIONINE L - 407
1epu_A_3881epu   A     MSESELENOMETHIONINE Y - 409
1epu_A_3881epu   A     MSESELENOMETHIONINE I - 411
1ezf_A_641ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID V - 69
1ezf_A_641ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID F - 72
1ezf_A_641ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID Y - 73
1ezf_A_641ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID L - 76
1ezf_A_641ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID R - 77
1ezf_A_641ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID D - 80
1v54_E_81v54   E     PSC(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE D - 8
1v54_E_81v54   E     PSC(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE F - 11
1v54_E_81v54   E     PSC(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE D - 12

Clusters included in this Subclass
CLUSTER: HH.5.51