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Information on SUBCLASS 5.8.1
Subclass Accession number: 2453
Subclass: 5.8.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005344 (>75 %)  
SCOP : 46457 (>75 %)  46458 (>75 %)  46463 (>75 %)  
 Number of loops: 11

Average sequence ID (%) : 13.6 +/- 15.3
Average RMSD (Å) : 0.727 +/- 0.374

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXcXphpXX
(φψ)-conformation: aaeaappaa
Pattern: [FILMV]xx[ilmtv][aekl][ehkmry]xx[GK][adegkn][adeknst][AFLMVW][EKNRST][adep][adekqt]xx
Conservation:1.682-1.217-0.6101.063-0.021-0.498-0.831-0.7982.503-0.210-0.3830.1650.7730.196-0.098-0.799-0.918
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aui_B_1081aui   B112128FQVLKMMVGNNLKDTQLHHHHHHHHTTSS-HHHHaaaaaaaaeaabxaaaa
1cg5_B_961cg5   B106122MVELALHYKKTFRPKEHHHHHHHHHGGG--HHHHaaaaaaaaeaaxxaaaa
1cp2_A_561cp2   A5672VLDTLREEGEDVELDSIHHHHHHHHGGG--HHHHaaaaaaaaeaapbaaaa
1cqx_A_951cqx   A103119LAAIKEVLGNAATDDIIHHHHHHHHGGG--HHHHaaaaaaaaeaaxxaaaa
1fhj_B_1011fhj   B111127VCVLAHHFGKEFTPQVQHHHHHHHHGGGS-HHHHaaaaaaaaeaaxxaaaa
1gcv_B_931gcv   B101117IVELAYLRKDCFTPHIQHHHHHHHHGGGS-HHHHaaaaaaaaeaaxxaaaa
1jl7_A_1031jl7   A111127LSAMEHRIGGKMNAAAKHHHHHHHHGGGS-HHHHaaaaaaaaeaaxxaaaa
1lfk_A_2091lfk   A210226IGAVVAEYGDDATDEELHHHHHHHHGGGS-HHHHaaaaaaaaeaaxxaaaa
1oj6_A_1051oj6   A114130LYMLEKSLGPAFTPATRHHHHHHHHGGGS-HHHHaaaaaaaaeaaxxaaaa
2gdm_*_1072gdm   -115131LKTIKEVVGAKWSEELNHHHHHHHHGGG--HHHHaaaaaaaaeaapbaaaa
2sas_*_282sas   -3551MTRYKEVNKGSLSDADYHHHHHHHHGGGS-HHHHaaaaaaaaeaabxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aui_B_1081aui   B     CACALCIUM ION E - 110
1aui_B_1081aui   B     CACALCIUM ION A - 139
1cg5_B_961cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE N - 97
1cg5_B_961cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE F - 98
1cg5_B_961cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 101
1cg5_B_961cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE F - 129
1cg5_B_961cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE V - 132
1cg5_B_961cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE A - 133
1cg5_B_961cg5   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 136
1cqx_A_951cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 95
1cqx_A_951cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE P - 96
1cqx_A_951cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 98
1cqx_A_951cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL V - 98
1cqx_A_951cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL L - 102
1cqx_A_951cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL I - 106
1cqx_A_951cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL W - 122
1cqx_A_951cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 125
1cqx_A_951cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL A - 125
1cqx_A_951cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 126
1cqx_A_951cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL Y - 126
1cqx_A_951cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 127
1cqx_A_951cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 129
1cqx_A_951cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL L - 129
1cqx_A_951cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 130
1cqx_A_951cqx   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 133
1fhj_B_1011fhj   B     HEMPROTOPORPHYRIN IX CONTAINING FE N - 102
1fhj_B_1011fhj   B     HEMPROTOPORPHYRIN IX CONTAINING FE F - 103
1fhj_B_1011fhj   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 106
1fhj_B_1011fhj   B     HEMPROTOPORPHYRIN IX CONTAINING FE G - 107
1fhj_B_1011fhj   B     HEMPROTOPORPHYRIN IX CONTAINING FE V - 137
1fhj_B_1011fhj   B     HEMPROTOPORPHYRIN IX CONTAINING FE A - 138
1fhj_B_1011fhj   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 141
1gcv_B_931gcv   B     HEMPROTOPORPHYRIN IX CONTAINING FE F - 93
1gcv_B_931gcv   B     HEMPROTOPORPHYRIN IX CONTAINING FE H - 94
1gcv_B_931gcv   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 95
1gcv_B_931gcv   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 96
1gcv_B_931gcv   B     HEMPROTOPORPHYRIN IX CONTAINING FE T - 97
1gcv_B_931gcv   B     HEMPROTOPORPHYRIN IX CONTAINING FE V - 127
1gcv_B_931gcv   B     HEMPROTOPORPHYRIN IX CONTAINING FE I - 128
1gcv_B_931gcv   B     HEMPROTOPORPHYRIN IX CONTAINING FE I - 131
1jl7_A_1031jl7   A     CNCYANIDE GROUP L - 106
1jl7_A_1031jl7   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 134
1jl7_A_1031jl7   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 137
1jl7_A_1031jl7   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 138
1lfk_A_2091lfk   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 232
1lfk_A_2091lfk   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 233
1lfk_A_2091lfk   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 236
1oj6_A_1051oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 105
1oj6_A_1051oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 106
1oj6_A_1051oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 109
1oj6_A_1051oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 137
1oj6_A_1051oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 140
1oj6_A_1051oj6   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 144
2gdm_*_1072gdm   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 107
2gdm_*_1072gdm   *     HEMPROTOPORPHYRIN IX CONTAINING FE P - 108
2gdm_*_1072gdm   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 110
2gdm_*_1072gdm   *     OXYOXYGEN MOLECULE V - 110
2gdm_*_1072gdm   *     HEMPROTOPORPHYRIN IX CONTAINING FE I - 114
2gdm_*_1072gdm   *     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 138
2gdm_*_1072gdm   *     HEMPROTOPORPHYRIN IX CONTAINING FE A - 142
2gdm_*_1072gdm   *     HEMPROTOPORPHYRIN IX CONTAINING FE I - 145
2sas_*_282sas   *     CACALCIUM ION N - 29
2sas_*_282sas   *     CACALCIUM ION D - 30
2sas_*_282sas   *     CACALCIUM ION A - 69
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1aui_B_1081aui   B CA3CALCIUM BINDING SITE.E - 110
1oj6_A_1051oj6   A AC1HEM BINDING SITE FOR CHAIN AF - 106

Clusters included in this Subclass
CLUSTER: HH.4.49
CLUSTER: HH.5.26