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Information on SUBCLASS 6.8.1
Subclass Accession number: 2494
Subclass: 6.8.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 47112 (>75 %)  47113 (>75 %)  
 Number of loops: 5

Average sequence ID (%) : 14.1 +/- 16.3
Average RMSD (Å) : 0.660 +/- 0.182

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XXpXXXhpXX
(φψ)-conformation: aapappbpaa
Pattern: [AFIW][el]x[ekl][AENQS][acdp][EGKQ]x[IMV][ES][aegt][aes][EKQ][FILV][akr][ER]x
Conservation:-0.414-0.445-0.945-0.515-0.017-0.876-0.061-1.2201.5361.071-0.773-0.2671.6460.723-0.3881.923-0.979
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1j5y_A_51j5y   A1733ILERSKEPVSGAQLAEEHHHH-SS-B-HHHHHHHaaaaxabxbxaaaaaaa
1mkm_A_41mkm   A1329FIVKNPGDVSVSEIAEKHHHH-SS-B-HHHHHHHaaaaxaxbbxaaaaaaa
1nup_A_831nup   A8399WESEQAQWMETVKVLRHHHHHSSS---HHHHHHHaaaaxabpbpaaaaaaa
1o08_A_10491o08   A10561072ILDLADKKVSAEEFKELHHTTSSS---HHHHHHHaaaabaxxxxaaaaaaa
1q44_A_2351q44   A243259AEFLECGFIEEEEVREIHHHH-SS---HHHHHHHaaaabaxxbxaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1j5y_A_51j5y   A     MSESELENOMETHIONINE T - 5
1j5y_A_51j5y   A     MSESELENOMETHIONINE V - 6
1j5y_A_51j5y   A     MSESELENOMETHIONINE R - 7
1j5y_A_51j5y   A     MSESELENOMETHIONINE Q - 8
1nup_A_831nup   A     NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE E - 84
1nup_A_831nup   A     NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE W - 90
1nup_A_831nup   A     NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE M - 91
1nup_A_831nup   A     NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE E - 92
1nup_A_831nup   A     NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE T - 93
1nup_A_831nup   A     NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE V - 94
1o08_A_10491o08   A     G16ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE R - 1049
1o08_A_10491o08   A     G16ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE S - 1052
1o08_A_10491o08   A     G16ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE K - 1076
1o08_A_10491o08   A     G16ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE N - 1077
1o08_A_10491o08   A     G16ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE Y - 1080

Clusters included in this Subclass
CLUSTER: HH.7.18