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Information on SUBCLASS 8.8.1
Subclass Accession number: 2529
Subclass: 8.8.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 1.17 (>75 %)  1.17.4 (>75 %)  1.17.4.12.7 (>75 %)  2.7.7 (>75 %)  2.7.7.74.1 (>75 %)  4.1.2 (>75 %)  4.1.2.25
GO : GO:0003887 (>75 %)  GO:0004150 (>75 %)  GO:0004518 (>75 %)  GO:0004527 (>75 %)  GO:0004748 (>75 %)  GO:0016725 (>75 %)  GO:0016728 (>75 %)  GO:0016772 (>75 %)  GO:0016779 (>75 %)  GO:0016788 (>75 %)  GO:0016829 (>75 %)  GO:0016830 (>75 %)  GO:0016832 (>75 %)  
SCOP : 47239 (>75 %)  47240 (>75 %)  47253 (>75 %)  55619 (>75 %)  55620 (>75 %)  55628 (>75 %)  56671 (>50 %)  56672 (>50 %)  56673 (>50 %)  
 Number of loops: 4

Average sequence ID (%) : 9.6 +/- 12.3
Average RMSD (Å) : 0.975 +/- 0.126

Consensus geometry
d (Å): 17 delta (°): 90-135 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: XpXDXXXXhXXc
(φψ)-conformation: aalpaaabppaa
Pattern: x[EHT][ADS]xx[KNST][ADG][DN]xx[DNV][FIT][AVY]x[TWY][DGNV][EGRS][ILV]xx[AERT][AIVW]xx[ITV]x
Conservation:-0.7700.4580.301-0.835-0.3770.3430.2403.220-1.3590.0710.0570.0100.1500.1971.400-0.835-0.4431.779-0.770-0.770-0.377-0.508-0.128-1.1631.010-0.901
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dhn_*_401dhn   -4065SEAGRTDNVIDTVHYGEVFEEVKSIMHHHHHH--GGGS--HHHHHHHHHHHHaaaaaavxaaabxxaaaaaaaaaaaa
1dpg_A_4141dpg   A419444IHDTMNGDGSNFADWNGVSIAWKFVDHHHHHHT--TTSB-HHHHHHHHHHHHaaaaaavbaaabxbaaaaaaaaaaaa
1nbu_A_401nbu   A4065AEAANSDDLADTYDYVRLASRAAEIVHHHHHH--GGGS--HHHHHHHHHHHHaaaaaalbaaabxxaaaaaaaaaaaa
1r51_A_431r51   A4368ETSYTKADNSVIVATDSIKNTIYITAHHHHHT--GGG---HHHHHHHHHHHHaaaaaalxaaaxxxaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dpg_A_4141dpg   A     PO4PHOSPHATE ION P - 414
1dpg_A_4141dpg   A     PO4PHOSPHATE ION Y - 415
1dpg_A_4141dpg   A     PO4PHOSPHATE ION M - 418
1nbu_A_401nbu   A     HHP6-HYDROXYMETHYL-7,8-DIHYDROPTERIN L - 48
1nbu_A_401nbu   A     HHP6-HYDROXYMETHYL-7,8-DIHYDROPTERIN T - 51
1nbu_A_401nbu   A     HHP6-HYDROXYMETHYL-7,8-DIHYDROPTERIN Y - 52
1nbu_A_401nbu   A     HHP6-HYDROXYMETHYL-7,8-DIHYDROPTERIN D - 53
1nbu_A_401nbu   A     HHP6-HYDROXYMETHYL-7,8-DIHYDROPTERIN Y - 54
1nbu_A_401nbu   A     HHP6-HYDROXYMETHYL-7,8-DIHYDROPTERIN V - 55
1r51_A_431r51   A     SACN-ACETYL-SERINE T - 47

Clusters included in this Subclass
CLUSTER: HH.8.14