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Information on SUBCLASS 4.1.2
Subclass Accession number: 267
Subclass: 4.1.2 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 29

Average sequence ID (%) : 12.8 +/- 14.2
Average RMSD (Å) : 0.734 +/- 0.317

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: pXXXpXXh
(φψ)-conformation: aabaapbb
Pattern: [adegknqrt][afilvw]x[ehknqrsty]xx[eknpr][dehknqst]xx[afgilmpvy]x
Conservation:-0.8790.415-0.1260.175-0.895-0.8702.0101.287-1.185-0.8580.7680.156
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b3t_A_5141b3t   A523533GTALAIPQCRL.HHHHH-TT-EE.aaaaabaabbb.
1b63_A_1641b63   A177188RIALARFDVTINHHHHH-TT-EEEaaaaabaabxbb
1b74_A_121b74   A1829AIRNRYRKVDIVHHHHHSSS-EEEaaaaabaapxbb
1cza_N_4231cza   N430441TLRRLVPDSDVRHHHHH-TTEEEEaaaaabaabbbb
1cza_N_8711cza   N878889TVKELSPKCNVSHHHHHSTTEEEEaaaaabaabbbb
1d2k_A_1071d2k   A114125LLKKNNRNLKTLHHHHH-TT-EEEaaaaabaaxbbb
1f89_A_251f89   A3849RAMKEQPDTKLVHHHHH-TTEEEEaaaaabaaxabb
1f9m_A_471f9m   A5869KLAEEYLDVIFLHHHHH-TTSEEEaaaaabaabxbb
1h7w_A_6181h7w   A627638ELKADFPDNIVIHHHHH-TTSEEEaaaaabaaxxbb
1i36_A_921i36   A97108MASSLIEKGGFVHHHHH-SSSEEEaaaaaxaabxbb
1ig8_A_2111ig8   A218229ASYYTDPETKMGHHHHH-TTEEEEaaaaabaapabb
1ii2_A_111ii2   A1727WALKIEKDSRL.HHHHH-TT-EE.aaaaaxaaxbb.
1itz_A_5091itz   A517528KVAVLNRKRPSIHHHHH-TTS-EEaaaaaxaabxbb
1ixc_A_1051ixc   A112123AFLTSTPTATVSHHHHH-TTEEEEaaaaabaaxbbb
1j8m_F_2281j8m   F234245KFNQASKIGTIIHHHHT-TTEEEEaaaaabaaxbbb
1jy1_A_2321jy1   A240251AQAKPYENISLCHHHTT-TTEEEEaaaaabaabbbb
1jys_A_1551jys   A160171KIRHNFPQAIAVHHHHH-TTEEEEaaaaabaaxabb
1lam_*_1801lam   -190201NLKSASIKTDVFHHHHH-SSEEEEaaaaabaabbbb
1lld_A_931lld   A110121NLVKVAPNAIYMHHHHH-TTSEEEaaaaabaaxxbb
1lu4_A_10371lu4   A10481059QVAAANPAVTFVHHHHH-TTSEEEaaaaabaabxxb
1ne9_A_311ne9   A3142GWAKVKNNWEPVHHHHHTTTSEEEaaaaaxaabxwb
1qzz_A_1951qzz   A199210AIALRAPHLRGTHHHHH-TT-EEEaaaaabaaxbbb
1r26_A_371r26   A4253KIAYEFPTVKFAHHHHH-TTSEEEaaaaabaabxbb
1rjd_A_1121rjd   A114125PLLQMFPHLAYVHHHHH-TTEEEEaaaaabaaxbbb
1tib_*_1111tib   -130141DAVREHPDYRVVHHHHH-TTSEEEaaaaabaaxxbb
1uwc_A_981uwc   A117128QQASQYPDYALTHHHHHSTTSEEEaaaaabaaxxbb
1v4v_A_2141v4v   A223234RVAEAFPHLTFVHHHHH-TTSEEEaaaaabaabbxb
1vrt_A_1561vrt   A170181PFRKQNPDIVIYHHHHH-TT-EEEaaaaabaaxbbb
3tgl_*_1093tgl   -128139DQFKQYPSYKVAHHHHH-TTSEEEaaaaabaaxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b63_A_1641b63   A     EDO1,2-ETHANEDIOL R - 177
1b63_A_1641b63   A     EDO1,2-ETHANEDIOL I - 178
1b63_A_1641b63   A     EDO1,2-ETHANEDIOL A - 181
1b74_A_121b74   A     DGND-GLUTAMINE G - 12
1b74_A_121b74   A     DGND-GLUTAMINE T - 14
1b74_A_121b74   A     DGND-GLUTAMINE V - 15
1cza_N_4231cza   N     ADPADENOSINE-5'-DIPHOSPHATE R - 425
1cza_N_4231cza   N     ADPADENOSINE-5'-DIPHOSPHATE R - 426
1cza_N_4231cza   N     ADPADENOSINE-5'-DIPHOSPHATE K - 429
1h7w_A_6181h7w   A     FMNFLAVIN MONONUCLEOTIDE S - 640
1i36_A_921i36   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE I - 112
1ig8_A_2111ig8   A     SULSULFATE ANION I - 231
1ig8_A_2111ig8   A     SULSULFATE ANION F - 232
1ixc_A_1051ixc   A     MSESELENOMETHIONINE T - 125
1jys_A_1551jys   A     ADEADENINE V - 171
1jys_A_1551jys   A     ADEADENINE E - 172
1lld_A_931lld   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 103
1lld_A_931lld   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 106
1lld_A_931lld   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 107
1qzz_A_1951qzz   A     ACTACETATE ION G - 195
1qzz_A_1951qzz   A     SAMS-ADENOSYLMETHIONINE G - 195
1qzz_A_1951qzz   A     ACTACETATE ION M - 196
1qzz_A_1951qzz   A     SAMS-ADENOSYLMETHIONINE M - 196
1qzz_A_1951qzz   A     ACTACETATE ION L - 197
1qzz_A_1951qzz   A     ACTACETATE ION A - 198
1qzz_A_1951qzz   A     ACTACETATE ION L - 211
1qzz_A_1951qzz   A     SAMS-ADENOSYLMETHIONINE V - 212
1qzz_A_1951qzz   A     SAMS-ADENOSYLMETHIONINE E - 213
1rjd_A_1121rjd   A     SAMS-ADENOSYLMETHIONINE I - 127
1rjd_A_1121rjd   A     SAMS-ADENOSYLMETHIONINE D - 128
1uwc_A_981uwc   A     NAGN-ACETYL-D-GLUCOSAMINE G - 98
1uwc_A_981uwc   A     NAGN-ACETYL-D-GLUCOSAMINE G - 99
1uwc_A_981uwc   A     FER3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID Y - 100
1uwc_A_981uwc   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 101
1uwc_A_981uwc   A     NAGN-ACETYL-D-GLUCOSAMINE I - 102
1uwc_A_981uwc   A     FER3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID H - 132
1v4v_A_2141v4v   A     MSESELENOMETHIONINE L - 214
1v4v_A_2141v4v   A     MSESELENOMETHIONINE L - 217
1v4v_A_2141v4v   A     MSESELENOMETHIONINE A - 218
1v4v_A_2141v4v   A     MSESELENOMETHIONINE L - 221
1v4v_A_2141v4v   A     MSESELENOMETHIONINE Y - 235
1v4v_A_2141v4v   A     MSESELENOMETHIONINE P - 236
1vrt_A_1561vrt   A     NEVNEVIRAPINE V - 179
1vrt_A_1561vrt   A     NEVNEVIRAPINE I - 180
1vrt_A_1561vrt   A     NEVNEVIRAPINE Y - 181
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1uwc_A_981uwc   A AC1NAG BINDING SITE FOR CHAIN AG - 98
1uwc_A_981uwc   A AC1NAG BINDING SITE FOR CHAIN AI - 102
1uwc_A_981uwc   A AC3NAG BINDING SITE FOR CHAIN BI - 105
1uwc_A_981uwc   A AC3NAG BINDING SITE FOR CHAIN BD - 109
1uwc_A_981uwc   A AC3NAG BINDING SITE FOR CHAIN BQ - 110

Clusters included in this Subclass
CLUSTER: HE.2.51
CLUSTER: HE.3.126
CLUSTER: HE.3.150
CLUSTER: HE.3.27
CLUSTER: HE.4.29
CLUSTER: HE.4.32
CLUSTER: HE.5.10
CLUSTER: HE.5.187