ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 1.1.60

Subclass Accession number: 2689
Subclass: 1.1.60

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 3

Average sequence ID (%) : 5.1 +/- 7.1
Average RMSD (Å) : 0.367 +/- 0.058

Consensus geometry

d (Å): 7

delta (°): 45-90

theta (°): 90-135

rho (°): 0-45

Consensus Sequence:	hhXhX
(φψ)-conformation:	bbpaa

Pattern:	x	x	[CIV]	[AMY]	[DV]	[APY]	[GST]	x	[FL]	[RTY]	x	[EMR]	x
Conservation:	-0.662	-0.482	1.500	-0.482	0.921	-0.842	0.419	-1.022	2.034	-0.662	0.599	-0.301	-1.022

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1jm6_A_1229	1jm6	A	1229	1241	HMVYVPSHLYHML	EEEE-HHHHHHHH	bbxbxaaaaaaaa
1ptm_A_33	1ptm	A	35	47	VVCADATLLTNRA	EEEE-HHHHHHHH	xxxbxaaaaaaaa
1tif_*_56	1tif	-	57	69	CRIMDYGKFRFEQ	EEEE-HHHHHHHH	bbxbxaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1jm6_A_1229	1jm6	A	MGMAGNESIUM ION	E - 1243
1jm6_A_1229	1jm6	A	ADPADENOSINE-5'-DIPHOSPHATE	E - 1243
1jm6_A_1229	1jm6	A	ADPADENOSINE-5'-DIPHOSPHATE	L - 1244
1jm6_A_1229	1jm6	A	MGMAGNESIUM ION	K - 1246
1jm6_A_1229	1jm6	A	MGMAGNESIUM ION	N - 1247
1jm6_A_1229	1jm6	A	ADPADENOSINE-5'-DIPHOSPHATE	N - 1247
1jm6_A_1229	1jm6	A	ADPADENOSINE-5'-DIPHOSPHATE	A - 1248
1jm6_A_1229	1jm6	A	ADPADENOSINE-5'-DIPHOSPHATE	R - 1250
1jm6_A_1229	1jm6	A	ADPADENOSINE-5'-DIPHOSPHATE	A - 1251
1ptm_A_33	1ptm	A	MSESELENOMETHIONINE	T - 44
1ptm_A_33	1ptm	A	MSESELENOMETHIONINE	N - 45
1ptm_A_33	1ptm	A	MSESELENOMETHIONINE	R - 46
1ptm_A_33	1ptm	A	MSESELENOMETHIONINE	A - 47

Clusters included in this Subclass

CLUSTER: EH.0.41

CLUSTER: EH.1.129