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Information on SUBCLASS 1.3.1
Subclass Accession number: 2714
Subclass: 1.3.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 40

Average sequence ID (%) : 16.9 +/- 18.9
Average RMSD (Å) : 0.398 +/- 0.137

Consensus geometry
d (Å): 5 delta (°): 0-45 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: hXXpX
(φψ)-conformation: bbeaa
Pattern: x[afgilmptv]x[DEGKQT][adegknqrst]x[adegknqst][aciltv]x
Conservation:-0.087-0.334-1.2791.8610.815-1.0060.0920.709-0.770
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a3c_*_351a3c   -3745VGIKTRGIYEEESHHHHHbxbeaaaaa
1aqw_A_601aqw   A6169TLYQSNTILEEESHHHHHbbbMaaaaa
1aw9_*_631aw9   -6472VLFESRAINEEESHHHHHbbbMaaaaa
1b4p_A_671b4p   A6876KITQSNAIMEEESHHHHHbbbMaaaaa
1bjt_*_4441bjt   -447455LTEGDSALSEEESHHHHHxbbeaaaaa
1cc1_S_1191cc1   S121129VAVGTCSAYEEESHHHHHbxxeaaaaa
1e3d_A_1071e3d   A109117VSIGTCACYEEESHHHHHbxbeaaaaa
1e5d_A_2301e5d   A230237.FRGADQCT.EESHHHHH.xbeaaaaa
1e6b_A_681e6b   A6977VINDSFAIIEEESHHHHHbbbMaaaaa
1ec7_A_501ec7   A5563IPGGEKIRKEE--HHHHHbpxeaaaaa
1eem_A_821eem   A8290LIYESAITCEEESHHHHHbbbMaaaaa
1f2e_A_621f2e   A6270TLTENPAILEEESHHHHHbbbMaaaaa
1f3b_A_621f3b   A6371KLAQTRAILEEESHHHHHbxbMaaaaa
1fs0_G_1121fs0   G116124AMIGSKGVSEEESHHHHHbxbeaaaaa
1fw1_A_671fw1   A6876TIHQSLAIIEEESHHHHHbbbMaaaaa
1gnw_A_621gnw   A6371KLFESRAITEEE-HHHHHbbbMaaaaa
1gwc_A_641gwc   A6573PVCESMIILEEESHHHHHxbbMaaaaa
1gy6_A_441gy6   A4553QFQGKAAIVEEESHHHHHxbbeaaaaa
1gy7_A_421gy7   A4351QLQGAKDIVEEESHHHHHbbbeaaaaa
1h7m_A_151h7m   A1624IVMGARKSIEEESHHHHHbbbeaaaaa
1ipa_A_281ipa   A3038LIEGAREIEEEESHHHHHxbxeaaaaa
1iyh_A_591iyh   A6068TLHQSLAIAEEE-HHHHHxbbMaaaaa
1jkg_A_501jkg   A5159AVSGQESLSEEESHHHHHxbbMaaaaa
1jkg_B_4561jkg   B456463.KHTRLNVV.EESHHHHH.xbeaaaaa
1k0m_A_721k0m   A7381VHTDTNKIEEEE-HHHHHxbbMaaaaa
1k3y_A_631k3y   A6472KLVQTRAILEEESHHHHHbbbMaaaaa
1lau_E_1841lau   E186194MLWGTHAQNEEESHHHHHbbbeaaaaa
1m98_A_2331m98   A233240.IVGKENTL.EESHHHHH.xbeaaaaa
1n2a_A_621n2a   A6270LLTEGVAIMEEESHHHHHbbbMaaaaa
1nkx_A_3451nkx   A348356CAVGPEEQKEEESHHHHHbxbeaaaaa
1nww_A_611nww   A6168.AYGRDAVE.EESHHHHH.bbeaaaaa
1ocv_A_451ocv   A4552.RSGTAAIR.EESHHHHH.xbeaaaaa
1okt_A_671okt   A6876ILAQSQAIVEEE-HHHHHbbbMaaaaa
1oyj_A_641oyj   A6573PVSESLVILEEESHHHHHxbbMaaaaa
1pxw_A_361pxw   A3745IRKGTNETTEEESHHHHHbbbeaaaaa
1s5a_A_501s5a   A5058RIEGKAAIYEEESHHHHHbbbMaaaaa
1ua4_A_1071ua4   A109117RMGGQAGIMEEESHHHHHbxbeaaaaa
1ubl_S_1071ubl   S109117IAYGTCATFEEESHHHHHbxbeaaaaa
1vk2_A_1201vk2   A122130VALGATALSEEESHHHHHbxxeaaaaa
3eug_A_1603eug   A162170LLWGSHAQKEEESHHHHHbbbeaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a3c_*_351a3c   *     SMSAMARIUM (III) ION R - 49
1aqw_A_601aqw   A     ILGGLUTAMYL GROUP Y - 63
1aqw_A_601aqw   A     ILGGLUTAMYL GROUP Q - 64
1aqw_A_601aqw   A     ILGGLUTAMYL GROUP S - 65
1aqw_A_601aqw   A     ILGGLUTAMYL GROUP N - 66
1b4p_A_671b4p   A     GPS(9S,10S)-9-(S-GLUTATHIONYL)-10-HYDROXY-9,10-DIHYDROPHENANTHRENE T - 70
1b4p_A_671b4p   A     GPS(9S,10S)-9-(S-GLUTATHIONYL)-10-HYDROXY-9,10-DIHYDROPHENANTHRENE Q - 71
1b4p_A_671b4p   A     GPS(9S,10S)-9-(S-GLUTATHIONYL)-10-HYDROXY-9,10-DIHYDROPHENANTHRENE S - 72
1b4p_A_671b4p   A     GPS(9S,10S)-9-(S-GLUTATHIONYL)-10-HYDROXY-9,10-DIHYDROPHENANTHRENE N - 73
1cc1_S_1191cc1   S     FS4IRON/SULFUR CLUSTER V - 123
1cc1_S_1191cc1   S     FE2FE (II) ION G - 124
1cc1_S_1191cc1   S     FS4IRON/SULFUR CLUSTER G - 124
1cc1_S_1191cc1   S     FE2FE (II) ION T - 125
1cc1_S_1191cc1   S     FS4IRON/SULFUR CLUSTER T - 125
1cc1_S_1191cc1   S     FE2FE (II) ION C - 126
1cc1_S_1191cc1   S     FS4IRON/SULFUR CLUSTER C - 126
1cc1_S_1191cc1   S     FE2FE (II) ION S - 127
1cc1_S_1191cc1   S     FS4IRON/SULFUR CLUSTER S - 127
1e3d_A_1071e3d   A     FSXBIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II) I - 111
1e3d_A_1071e3d   A     FSXBIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II) G - 112
1e3d_A_1071e3d   A     FSXBIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II) T - 113
1e3d_A_1071e3d   A     H2SHYDROSULFURIC ACID T - 113
1e3d_A_1071e3d   A     FSXBIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II) C - 114
1e3d_A_1071e3d   A     H2SHYDROSULFURIC ACID C - 114
1e3d_A_1071e3d   A     FSXBIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II) A - 115
1e3d_A_1071e3d   A     H2SHYDROSULFURIC ACID Y - 117
1eem_A_821eem   A     GSHGLUTHATHIONE Y - 84
1eem_A_821eem   A     GSHGLUTHATHIONE E - 85
1eem_A_821eem   A     GSHGLUTHATHIONE S - 86
1eem_A_821eem   A     GSHGLUTHATHIONE A - 87
1f2e_A_621f2e   A     GTTGLUTATHIONE T - 64
1f2e_A_621f2e   A     GTTGLUTATHIONE E - 65
1f2e_A_621f2e   A     GTTGLUTATHIONE N - 66
1f2e_A_621f2e   A     GTTGLUTATHIONE P - 67
1f3b_A_621f3b   A     GBX2-AMINO-4-[1-(CARBOXYMETHYL-CARBAMOYL)-2-(9-HYDROXY-7, 8-DIOXO-7,8,9,10-TETRAHYDRO-BENZO[DEF]CHRYSEN-10-YLSULFANYL)-ETHYLCARBAMOYL]-BUTYRIC ACID A - 65
1f3b_A_621f3b   A     GBX2-AMINO-4-[1-(CARBOXYMETHYL-CARBAMOYL)-2-(9-HYDROXY-7, 8-DIOXO-7,8,9,10-TETRAHYDRO-BENZO[DEF]CHRYSEN-10-YLSULFANYL)-ETHYLCARBAMOYL]-BUTYRIC ACID Q - 66
1f3b_A_621f3b   A     GBX2-AMINO-4-[1-(CARBOXYMETHYL-CARBAMOYL)-2-(9-HYDROXY-7, 8-DIOXO-7,8,9,10-TETRAHYDRO-BENZO[DEF]CHRYSEN-10-YLSULFANYL)-ETHYLCARBAMOYL]-BUTYRIC ACID T - 67
1f3b_A_621f3b   A     GBX2-AMINO-4-[1-(CARBOXYMETHYL-CARBAMOYL)-2-(9-HYDROXY-7, 8-DIOXO-7,8,9,10-TETRAHYDRO-BENZO[DEF]CHRYSEN-10-YLSULFANYL)-ETHYLCARBAMOYL]-BUTYRIC ACID R - 68
1fw1_A_671fw1   A     GSHGLUTHATHIONE H - 70
1fw1_A_671fw1   A     GSHGLUTHATHIONE Q - 71
1fw1_A_671fw1   A     GSHGLUTHATHIONE S - 72
1fw1_A_671fw1   A     GSHGLUTHATHIONE L - 73
1gnw_A_621gnw   A     GTXS-HEXYLGLUTATHIONE F - 65
1gnw_A_621gnw   A     GTXS-HEXYLGLUTATHIONE E - 66
1gnw_A_621gnw   A     GTXS-HEXYLGLUTATHIONE S - 67
1gnw_A_621gnw   A     GTXS-HEXYLGLUTATHIONE R - 68
1gwc_A_641gwc   A     GTXS-HEXYLGLUTATHIONE C - 67
1gwc_A_641gwc   A     GTXS-HEXYLGLUTATHIONE E - 68
1gwc_A_641gwc   A     GTXS-HEXYLGLUTATHIONE S - 69
1gwc_A_641gwc   A     GTXS-HEXYLGLUTATHIONE M - 70
1gwc_A_641gwc   A     GTXS-HEXYLGLUTATHIONE I - 72
1iyh_A_591iyh   A     GSHGLUTHATHIONE H - 62
1iyh_A_591iyh   A     GSHGLUTHATHIONE Q - 63
1iyh_A_591iyh   A     GSHGLUTHATHIONE S - 64
1iyh_A_591iyh   A     MGMAGNESIUM ION L - 65
1iyh_A_591iyh   A     GSHGLUTHATHIONE L - 65
1k3y_A_631k3y   A     GTXS-HEXYLGLUTATHIONE V - 66
1k3y_A_631k3y   A     GTXS-HEXYLGLUTATHIONE Q - 67
1k3y_A_631k3y   A     GOLGLYCEROL Q - 67
1k3y_A_631k3y   A     GTXS-HEXYLGLUTATHIONE T - 68
1k3y_A_631k3y   A     GOLGLYCEROL T - 68
1k3y_A_631k3y   A     GTXS-HEXYLGLUTATHIONE R - 69
1k3y_A_631k3y   A     GOLGLYCEROL R - 69
1k3y_A_631k3y   A     GTXS-HEXYLGLUTATHIONE I - 71
1k3y_A_631k3y   A     GOLGLYCEROL L - 72
1m98_A_2331m98   A     HEQ3-[18-(4-HYDROXY-2,6,6-TRIMETHYL-CYCLOHEX-1-ENYL)-3,7, 12,16-TETRAMETHYL-OCTADECA-1,3,5,7,9,11,13,15, 17-NONAENYL]-2,4,4-TRIMETHYL-CYCLOHEX-2-ENONE F - 242
1m98_A_2331m98   A     HEQ3-[18-(4-HYDROXY-2,6,6-TRIMETHYL-CYCLOHEX-1-ENYL)-3,7, 12,16-TETRAMETHYL-OCTADECA-1,3,5,7,9,11,13,15, 17-NONAENYL]-2,4,4-TRIMETHYL-CYCLOHEX-2-ENONE F - 243
1m98_A_2331m98   A     HEQ3-[18-(4-HYDROXY-2,6,6-TRIMETHYL-CYCLOHEX-1-ENYL)-3,7, 12,16-TETRAMETHYL-OCTADECA-1,3,5,7,9,11,13,15, 17-NONAENYL]-2,4,4-TRIMETHYL-CYCLOHEX-2-ENONE E - 246
1n2a_A_621n2a   A     GTSGLUTATHIONE SULFONIC ACID T - 64
1n2a_A_621n2a   A     GTSGLUTATHIONE SULFONIC ACID E - 65
1n2a_A_621n2a   A     GTSGLUTATHIONE SULFONIC ACID G - 66
1n2a_A_621n2a   A     GTSGLUTATHIONE SULFONIC ACID V - 67
1nkx_A_3451nkx   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 364
1nww_A_611nww   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID Y - 62
1nww_A_611nww   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID G - 63
1nww_A_611nww   A     HPNHEPTANAMIDE L - 74
1okt_A_671okt   A     FMTFORMIC ACID A - 70
1okt_A_671okt   A     FMTFORMIC ACID Q - 71
1okt_A_671okt   A     FMTFORMIC ACID S - 72
1okt_A_671okt   A     FMTFORMIC ACID Q - 73
1okt_A_671okt   A     FMTFORMIC ACID I - 75
1oyj_A_641oyj   A     GOLGLYCEROL P - 65
1oyj_A_641oyj   A     GOLGLYCEROL V - 66
1oyj_A_641oyj   A     GTTGLUTATHIONE S - 67
1oyj_A_641oyj   A     GOLGLYCEROL S - 67
1oyj_A_641oyj   A     GTTGLUTATHIONE E - 68
1oyj_A_641oyj   A     GOLGLYCEROL E - 68
1oyj_A_641oyj   A     GTTGLUTATHIONE S - 69
1oyj_A_641oyj   A     GTTGLUTATHIONE L - 70
1oyj_A_641oyj   A     GOLGLYCEROL V - 71
1oyj_A_641oyj   A     GTTGLUTATHIONE I - 72
1oyj_A_641oyj   A     GOLGLYCEROL I - 72
1s5a_A_501s5a   A     MSESELENOMETHIONINE Y - 58
1s5a_A_501s5a   A     ACTACETATE ION Y - 60
1s5a_A_501s5a   A     GOLGLYCEROL Y - 60
1s5a_A_501s5a   A     MSESELENOMETHIONINE I - 61
1s5a_A_501s5a   A     GOLGLYCEROL I - 61
1ua4_A_1071ua4   A     GLCGLUCOSE M - 110
1ua4_A_1071ua4   A     GLCGLUCOSE G - 111
1ua4_A_1071ua4   A     GLCGLUCOSE G - 112
1ua4_A_1071ua4   A     GLCGLUCOSE Q - 113
1ua4_A_1071ua4   A     GLCGLUCOSE I - 116
1ubl_S_1071ubl   S     FS4IRON/SULFUR CLUSTER Y - 111
1ubl_S_1071ubl   S     FS4IRON/SULFUR CLUSTER G - 112
1ubl_S_1071ubl   S     FS4IRON/SULFUR CLUSTER T - 113
1ubl_S_1071ubl   S     FS4IRON/SULFUR CLUSTER C - 114
1ubl_S_1071ubl   S     FS4IRON/SULFUR CLUSTER A - 115
1ubl_S_1071ubl   S     MPD2-METHYL-2,4-PENTANEDIOL T - 116
1ubl_S_1071ubl   S     MPD2-METHYL-2,4-PENTANEDIOL F - 117
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e3d_A_1071e3d   A FE1THIS CLUSTER IS PRODUCED FROM AN FE4-S4 POSSIBLY RESULTS FROM LOSS OF S IN CONVERSION OF FE4-S4 CLUSTER TO FE4-S3-O3.C - 114
1gwc_A_641gwc   A AC1GTX BINDING SITE FOR CHAIN AE - 68
1gwc_A_641gwc   A AC1GTX BINDING SITE FOR CHAIN AS - 69
1okt_A_671okt   A AC1FMT BINDING SITE FOR CHAIN AQ - 71
1okt_A_671okt   A AC1FMT BINDING SITE FOR CHAIN AS - 72
1okt_A_671okt   A AC1FMT BINDING SITE FOR CHAIN AQ - 73

Clusters included in this Subclass
CLUSTER: EH.1.14