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Information on SUBCLASS 1.3.8
Subclass Accession number: 2721
Subclass: 1.3.8 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 25.3 +/- 27.0
Average RMSD (Å) : 0.682 +/- 0.189

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: hXcXX
(φψ)-conformation: bbeaa
Pattern: [eknrty][ailmtv]x[ILV][agnrs][ADG][AEGPT]x[alm]x[aest]
Conservation:-0.975-0.511-0.6891.914-0.3511.906-0.303-0.2800.026-0.8450.108
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
16pk_*_23616pk   -236246YLLIGGAMAYTEEEE-TTHHHHbbbbbeaaaaa
1ff9_A_1941ff9   A195205VTNVAGPELMAEEEE-THHHHHpbbbbeaaaaa
1ga6_A_2791ga6   A280290LQQIGGTSLASEEEE-SHHHHHxbxbbeaaaaa
1gci_*_2131gci   -214224YASLNGTSMATEEEE-SHHHHHbbbbbeaaaaa
1hdi_A_2321hdi   A232242EMIIGGGMAFTEEEE-GGGHHHbbxbbeaaaaa
1ic6_A_2161ic6   A217227TRSISGTSMATEEEE-SHHHHHbbbbbeaaaaa
1jj2_D_711jj2   D7282KVTLRDEMAEEEEEE-THHHHHbbxbbeaaaaa
1php_*_2141php   -214224NLIIGGGLAYTEEEE-TTHHHHbbbbbeaaaaa
1v6s_A_2111v6s   A211221RLLIGGAMAFTEEEE-STTHHHbbbbbeaaaaa
1v8c_A_21v8c   A212KVNLYATFRDLEEEE-THHHHHxbxbbeaaaaa
1vpe_*_2141vpe   -214224RILIGGAMMFTEEEE-TTTHHHbbxbbeaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
16pk_*_23616pk   *     BIS1,1,5,5-TETRAFLUOROPHOSPHOPENTYLPHOSPHONIC ACID ADENYLATE ESTER G - 240
16pk_*_23616pk   *     BIS1,1,5,5-TETRAFLUOROPHOSPHOPENTYLPHOSPHONIC ACID ADENYLATE ESTER G - 241
16pk_*_23616pk   *     BIS1,1,5,5-TETRAFLUOROPHOSPHOPENTYLPHOSPHONIC ACID ADENYLATE ESTER A - 242
16pk_*_23616pk   *     BIS1,1,5,5-TETRAFLUOROPHOSPHOPENTYLPHOSPHONIC ACID ADENYLATE ESTER Y - 245
1ga6_A_2791ga6   A     GOLGLYCEROL L - 280
1ga6_A_2791ga6   A     ACTACETATE ION T - 286
1ga6_A_2791ga6   A     ACTACETATE ION S - 287
1gci_*_2131gci   *     CACALCIUM ION Y - 214
1hdi_A_2321hdi   A     AMPADENOSINE MONOPHOSPHATE G - 236
1hdi_A_2321hdi   A     AMPADENOSINE MONOPHOSPHATE G - 237
1hdi_A_2321hdi   A     AMPADENOSINE MONOPHOSPHATE G - 238
1hdi_A_2321hdi   A     AMPADENOSINE MONOPHOSPHATE M - 239
1hdi_A_2321hdi   A     AMPADENOSINE MONOPHOSPHATE F - 241
1php_*_2141php   *     ADPADENOSINE-5'-DIPHOSPHATE G - 218
1php_*_2141php   *     ADPADENOSINE-5'-DIPHOSPHATE G - 219
1php_*_2141php   *     ADPADENOSINE-5'-DIPHOSPHATE G - 220
1php_*_2141php   *     ADPADENOSINE-5'-DIPHOSPHATE L - 221
1php_*_2141php   *     ADPADENOSINE-5'-DIPHOSPHATE Y - 223
1vpe_*_2141vpe   *     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER G - 218
1vpe_*_2141vpe   *     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER G - 219
1vpe_*_2141vpe   *     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 220
1vpe_*_2141vpe   *     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER M - 222
1vpe_*_2141vpe   *     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER F - 223
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1hdi_A_2321hdi   A AMPAMP BINDING SITEG - 237
1hdi_A_2321hdi   A AMPAMP BINDING SITEG - 238

Clusters included in this Subclass
CLUSTER: EH.3.62