ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 1.3.14

Subclass Accession number: 2727
Subclass: 1.3.14

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 22.2 +/- 19.6
Average RMSD (Å) : 0.320 +/- 0.045

Consensus geometry

d (Å): 7

delta (°): 0-45

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	hXcXX
(φψ)-conformation:	bbeaa

Pattern:	[ITY]	x	[AG]	[ACGT]	[DGS]	[FIT]	[GS]	[ags]	x
Conservation:	-0.102	-1.369	1.375	-0.420	0.739	-0.032	1.417	-0.487	-1.121

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1g0u_1_124	1g0u	1	124	132	TLATGFGAH	EEE-THHHH	bbbbeaaaa
1moq_*_294	1moq	-	297	305	ILACGTSYN	EEE-HHHHH	bbbbeaaaa
1nri_A_71	1nri	A	73	81	YIGAGTSGR	EEESHHHHH	bbbbeaaaa
1oxw_A_72	1oxw	A	73	81	IGGTSTGGL	EEE-THHHH	bbbbeaaaa
1qo7_A_186	1qo7	A	188	196	IQGGDIGSF	EEE-THHHH	bbbbeaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1moq_*_294	1moq	*	GLPGLUCOSAMINE 6-PHOSPHATE	C - 300
1moq_*_294	1moq	*	GLPGLUCOSAMINE 6-PHOSPHATE	G - 301
1moq_*_294	1moq	*	GLPGLUCOSAMINE 6-PHOSPHATE	T - 302
1moq_*_294	1moq	*	GLPGLUCOSAMINE 6-PHOSPHATE	S - 303
1moq_*_294	1moq	*	MPD2-METHYL-2,4-PENTANEDIOL	Y - 304
1moq_*_294	1moq	*	MPD2-METHYL-2,4-PENTANEDIOL	N - 305
1nri_A_71	1nri	A	MSESELENOMETHIONINE	L - 71
1nri_A_71	1nri	A	MSESELENOMETHIONINE	I - 72
1nri_A_71	1nri	A	MSESELENOMETHIONINE	D - 86
1nri_A_71	1nri	A	MSESELENOMETHIONINE	C - 90
1nri_A_71	1nri	A	MSESELENOMETHIONINE	P - 92
1nri_A_71	1nri	A	MSESELENOMETHIONINE	T - 93
1nri_A_71	1nri	A	MSESELENOMETHIONINE	F - 94
1oxw_A_72	1oxw	A	MSESELENOMETHIONINE	S - 77
1oxw_A_72	1oxw	A	MSESELENOMETHIONINE	G - 80
1oxw_A_72	1oxw	A	MSESELENOMETHIONINE	L - 81
1oxw_A_72	1oxw	A	MSESELENOMETHIONINE	L - 82
1oxw_A_72	1oxw	A	MSESELENOMETHIONINE	T - 83

Clusters included in this Subclass

CLUSTER: EH.1.77