Logo
Information on SUBCLASS 2.1.13
Subclass Accession number: 2762
Subclass: 2.1.13 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 11.7 +/- 14.1
Average RMSD (Å) : 0.721 +/- 0.264

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXppXX
(φψ)-conformation: bbabaa
Pattern: xxxx[ADEGST][dhnqrsty][dehkns]xxx[ailv]xx[afvw]
Conservation:-0.631-0.2730.570-0.7651.959-0.5231.5320.248-0.679-1.2021.154-0.497-1.2250.333
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a04_A_71a04   A922ILLIDDHPMLRTGVEEEE-S-HHHHHHHbbbbbabaaaaaaa
1b0u_A_2061b0u   A206219MVVVTHEMGFARHVEEEE-S-HHHHHHHbbbxbaxaaaaaaa
1f07_A_1481f07   A148161IYMGAQGPMMLKTAEEEE--SHHHHHHHbbbxbabaaaaaaa
1gtz_A_511gtz   A5265DFRQSNHEGELVDWEEEE-S-HHHHHHHbbbbbabaaaaaaa
1h05_A_461h05   A4861VVRQSDSEAQLLDWEEEE-S-HHHHHHHbbbbbaxaaaaaaa
1h2e_A_511h2e   A5164AIYTSTSGRALETAEEEE-SSHHHHHHHbbbbxaxaaaaaaa
1li4_A_2381li4   A239252VIITEIDPINALQAEEEE-S-HHHHHHHxbbbbaxaaaaaaa
1m3u_A_191m3u   A2033ATITAYDYSFAKLFEEEE--SHHHHHHHxbbxbabaaaaaaa
1nfp_*_711nfp   -7285IHVLATSPETVVKAEEEE--SHHHHHHHxbbxxabaaaaaaa
1ohe_A_1171ohe   A119132VHFTGSDQRKQANAEEEE-S-HHHHHHHbxbbxaxaaaaaaa
1sdo_A_741sdo   A7992NYYVTADPKLIRETEEEE-S-HHHHHHHbbbxbaxaaaaaaa
1upa_A_5291upa   A529542DATRATNREELLAAEEEE--SHHHHHHHpbbbbabaaaaaaa
1uqr_A_451uqr   A4760DYFQANGEESLINREEEE-SSHHHHHHHbbbbbabaaaaaaa
1uzb_A_4461uzb   A447460GGVYSRKREHLEWAEEEE-S-HHHHHHHbbbbbaxaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b0u_A_2061b0u   A     ATPADENOSINE-5'-TRIPHOSPHATE V - 209
1b0u_A_2061b0u   A     ATPADENOSINE-5'-TRIPHOSPHATE H - 211
1f07_A_1481f07   A     MPD2-METHYL-2,4-PENTANEDIOL A - 152
1f07_A_1481f07   A     MPD2-METHYL-2,4-PENTANEDIOL Q - 153
1f07_A_1481f07   A     MPD2-METHYL-2,4-PENTANEDIOL G - 154
1f07_A_1481f07   A     MPD2-METHYL-2,4-PENTANEDIOL P - 155
1f07_A_1481f07   A     MPD2-METHYL-2,4-PENTANEDIOL L - 158
1gtz_A_511gtz   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL E - 59
1h2e_A_511h2e   A     PO4PHOSPHATE ION R - 59
1h2e_A_511h2e   A     EDO1,2-ETHANEDIOL R - 59
1li4_A_2381li4   A     IPAISOPROPYL ALCOHOL R - 238
1li4_A_2381li4   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 242
1li4_A_2381li4   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE E - 243
1li4_A_2381li4   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 244
1li4_A_2381li4   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE D - 245
1li4_A_2381li4   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 248
1m3u_A_191m3u   A     KPLKETOPANTOATE T - 23
1m3u_A_191m3u   A     KPLKETOPANTOATE Y - 25
1nfp_*_711nfp   *     MYRMYRISTIC ACID I - 72
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE V - 74
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE T - 77
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE S - 78
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE P - 79
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE E - 80
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE T - 81
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE K - 84
1nfp_*_711nfp   *     MYRMYRISTIC ACID K - 84
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE A - 85
1nfp_*_711nfp   *     MYRMYRISTIC ACID K - 87
1upa_A_5291upa   A     MSESELENOMETHIONINE A - 533
1upa_A_5291upa   A     MSESELENOMETHIONINE T - 534
1upa_A_5291upa   A     MSESELENOMETHIONINE N - 535
1upa_A_5291upa   A     MSESELENOMETHIONINE R - 536
1upa_A_5291upa   A     MSESELENOMETHIONINE L - 539
1upa_A_5291upa   A     MSESELENOMETHIONINE L - 540
1upa_A_5291upa   A     MSESELENOMETHIONINE L - 543
1uqr_A_451uqr   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL E - 54
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1a04_A_71a04   A 1PHOSPHORYLATION SITE.D - 13
1a04_A_71a04   A 1PHOSPHORYLATION SITE.D - 14
1gtz_A_511gtz   A TRATRS BINDING SITE FOR CHAIN AE - 59
1h05_A_461h05   A SO3SO4 BINDING SITE FOR CHAIN AR - 50
1h05_A_461h05   A SO2SO4 BINDING SITE FOR CHAIN AS - 54
1h05_A_461h05   A SO3SO4 BINDING SITE FOR CHAIN AW - 61
1h05_A_461h05   A SO3SO4 BINDING SITE FOR CHAIN AQ - 64
1h2e_A_511h2e   A PO4PO4 BINDING SITE FOR CHAIN AR - 59
1uqr_A_451uqr   A AC1SO4 BINDING SITE FOR CHAIN AG - 53
1uqr_A_451uqr   A AC1SO4 BINDING SITE FOR CHAIN AE - 54
1uqr_A_451uqr   A AC1SO4 BINDING SITE FOR CHAIN AE - 55

Clusters included in this Subclass
CLUSTER: EH.2.41