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Information on SUBCLASS 2.5.4
Subclass Accession number: 2842
Subclass: 2.5.4 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 20.0 +/- 19.3
Average RMSD (Å) : 0.583 +/- 0.337

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 45-90 rho (°): 180-225
Consensus Sequence: hpGXhX
(φψ)-conformation: bbepaa
Pattern: xx[hlv][krt][G]xxx[AEKS][flv]
Conservation:-0.169-0.631-0.4120.0632.711-0.528-0.819-0.1390.157-0.233
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1fdr_*_1801fdr   -180188.SLTGRIPAL.EEES-HHHH.bxbebaaaa
1npb_A_1111npb   A113122ELHVGSLAAREEEE--HHHHbxbbexaaaa
1o4s_A_3161o4s   A319328FKVRGDDVKFEE-SS-HHHHbxbxexaaaa
1p1c_A_1081p1c   A110119VPLKGLWEEVEEEES-HHHHbwbxexaaaa
1qmg_A_2451qmg   A249258VCPKGMGPSVEEESS-HHHHbbxxexaaaa
1ufk_A_21ufk   A413YRLKGTLEALEEEES-HHHHbxbxexaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1o4s_A_3161o4s   A     PLPPYRIDOXAL-5'-PHOSPHATE Y - 316
1p1c_A_1081p1c   A     SAHS-ADENOSYL-L-HOMOCYSTEINE G - 114
1p1c_A_1081p1c   A     SAHS-ADENOSYL-L-HOMOCYSTEINE L - 115
1p1c_A_1081p1c   A     SAHS-ADENOSYL-L-HOMOCYSTEINE W - 116
1p1c_A_1081p1c   A     SAHS-ADENOSYL-L-HOMOCYSTEINE E - 117
1qmg_A_2451qmg   A     DMV2,3-DIHYDROXY-VALERIANIC ACID P - 251
1qmg_A_2451qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE P - 251
1qmg_A_2451qmg   A     MNMANGANESE (II) ION P - 251
1qmg_A_2451qmg   A     DMV2,3-DIHYDROXY-VALERIANIC ACID K - 252
1qmg_A_2451qmg   A     MNMANGANESE (II) ION K - 252
1qmg_A_2451qmg   A     DMV2,3-DIHYDROXY-VALERIANIC ACID G - 253
1qmg_A_2451qmg   A     MNMANGANESE (II) ION G - 253
1qmg_A_2451qmg   A     DMV2,3-DIHYDROXY-VALERIANIC ACID M - 254
1qmg_A_2451qmg   A     DMV2,3-DIHYDROXY-VALERIANIC ACID G - 255

Clusters included in this Subclass
CLUSTER: EH.2.243
CLUSTER: EH.3.168