ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.6.2

Subclass Accession number: 2934
Subclass: 3.6.2

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 11

Average sequence ID (%) : 10.9 +/- 14.6
Average RMSD (Å) : 0.509 +/- 0.281

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	hXchXXX
(φψ)-conformation:	bblppaa

Pattern:	x	[AFILPVY]	[fgilvy]	x	[dhkn]	[AILMPTV]	x	x	x	x	x	x	[aekq]
Conservation:	-0.489	0.676	-0.496	-1.283	2.511	0.640	-0.644	-0.383	-1.175	-0.069	0.083	-0.207	0.836

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aua_*_209	1aua	-	212	224	FYIINAPFGFSTA	EEEES--HHHHHH	bbbblxxaaaaaa
1e3p_A_501	1e3p	A	504	516	VALTDILGAEDAF	EEEES--HHHHHH	bxbxlxxaaaaaa
1ii2_A_4	1ii2	A	4	16	TIHRNLLSPELVQ	EEEES--HHHHHH	xxbblxxaaaaaa
1j3b_A_15	1j3b	A	15	26	.VFWNTVSPVLVE	.EEES--HHHHHH	.bbxlpxaaaaaa
1kaf_A_159	1kaf	A	162	174	IFGYKMMEHHIQK	EEEES--HHHHHH	bbbblxxaaaaaa
1kvk_A_339	1kvk	A	343	355	LLKPGLERAKVEA	EE-TT--HHHHHH	xbxxgxxaaaaaa
1m1n_A_399	1m1n	A	399	411	LLYDDVTGYEFEE	EEEES-BHHHHHH	xbbblpxaaaaaa
1os1_A_22	1os1	A	22	34	DIVYNPSYDLLYQ	EEEES--HHHHHH	bbbxlxxaaaaaa
1qgu_A_397	1qgu	A	397	409	LLFDDASSYELEA	EEEES-BHHHHHH	xbbblxxaaaaaa
1r6l_A_171	1r6l	A	171	183	VPVLDLDYLEDSA	EEEES--HHHHHH	bwbxvxxaaaaaa
1rku_A_165	1rku	A	166	178	GILFHAPENVIRE	EEEES--HHHHHH	bbxblxxaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1aua_*_209	1aua	*	BOGB-OCTYLGLUCOSIDE	M - 209
1aua_*_209	1aua	*	BOGB-OCTYLGLUCOSIDE	G - 210
1aua_*_209	1aua	*	BOGB-OCTYLGLUCOSIDE	K - 211
1aua_*_209	1aua	*	BOGB-OCTYLGLUCOSIDE	F - 212
1aua_*_209	1aua	*	BOGB-OCTYLGLUCOSIDE	I - 214
1aua_*_209	1aua	*	BOGB-OCTYLGLUCOSIDE	F - 221
1j3b_A_15	1j3b	A	PO4PHOSPHATE ION	T - 19
1j3b_A_15	1j3b	A	PO4PHOSPHATE ION	V - 20
1j3b_A_15	1j3b	A	PO4PHOSPHATE ION	S - 21
1j3b_A_15	1j3b	A	PO4PHOSPHATE ION	P - 22
1r6l_A_171	1r6l	A	MSESELENOMETHIONINE	V - 171
1r6l_A_171	1r6l	A	MSESELENOMETHIONINE	P - 172
1r6l_A_171	1r6l	A	MSESELENOMETHIONINE	V - 173
1r6l_A_171	1r6l	A	MSESELENOMETHIONINE	L - 174
1rku_A_165	1rku	A	MGMAGNESIUM ION	F - 169
1rku_A_165	1rku	A	MGMAGNESIUM ION	H - 170
1rku_A_165	1rku	A	MGMAGNESIUM ION	A - 171
1rku_A_165	1rku	A	MGMAGNESIUM ION	P - 172

Clusters included in this Subclass

CLUSTER: EH.4.63