Information on SUBCLASS 3.8.4 |
Subclass Accession number: 2954
Subclass: 3.8.4 Type: EH beta-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 7 Average sequence ID (%) : 17.0 +/- 21.3 Average RMSD (Å) : 0.971 +/- 0.170 Consensus geometry
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Consensus Sequence: | XXhXppp |
(φψ)-conformation: | bbppbaa |
Pattern: | [lv] | [FIMVY] | x | [aert] | [dp] | x | [CDST] | [der] | [AEQS] | [adg] | [filv] | x | [egns] | [AFGIT] | [agikv] | x |
Conservation: | 2.274 | 1.027 | -1.005 | -0.408 | 1.302 | -0.644 | 0.561 | 0.367 | 0.894 | -0.235 | -0.005 | -0.227 | -0.550 | -0.960 | -1.359 | -1.030 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a9x_A_615 | 1a9x | A | 616 | 631 | LYFEPVTLEDVLEIVR | EE----SHHHHHHHHH | bbxbxxbaaaaaaaaa |
1gt9_1_94 | 1gt9 | 1 | 97 | 112 | VYFAPNTDAGFLNAIT | EEE--SSHHHHHHHHH | bxxbxxbaaaaaaaaa |
1jak_A_43 | 1jak | A | 43 | 57 | .IRVDDSREARRVGDY | .EE--SSHHHHHHHHH | .bxbxxbaaaaaaaaa |
1ols_B_69 | 1ols | B | 69 | 84 | VFNTPLCEQGIVGFGI | EEE--S-HHHHHHHHH | bbxbxxbaaaaaaaaa |
1qs0_B_55 | 1qs0 | B | 55 | 70 | VFDAPISESGIVGTAV | EEE--S-HHHHHHHHH | bbxbxxbaaaaaaaaa |
1umd_B_53 | 1umd | B | 53 | 68 | VMDTPLSEAAIVGAAL | EEE--S-HHHHHHHHH | bbxbxxbaaaaaaaaa |
1v39_*_109 | 1v39 | - | 111 | 126 | LVTRFVDEEYLRSIKK | EEE----HHHHHHHHH | xbbbxxbaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1qs0_B_55 | 1qs0 | B | MSESELENOMETHIONINE | F - 56 |
1qs0_B_55 | 1qs0 | B | MSESELENOMETHIONINE | V - 66 |
1qs0_B_55 | 1qs0 | B | MSESELENOMETHIONINE | G - 67 |
1qs0_B_55 | 1qs0 | B | MSESELENOMETHIONINE | T - 68 |
1qs0_B_55 | 1qs0 | B | MSESELENOMETHIONINE | A - 69 |
1qs0_B_55 | 1qs0 | B | MSESELENOMETHIONINE | V - 70 |
1umd_B_53 | 1umd | B | TDPTHIAMIN DIPHOSPHATE | L - 58 |
1umd_B_53 | 1umd | B | TDPTHIAMIN DIPHOSPHATE | E - 60 |
1v39_*_109 | 1v39 | * | SAHS-ADENOSYL-L-HOMOCYSTEINE | R - 114 |
1v39_*_109 | 1v39 | * | SAHS-ADENOSYL-L-HOMOCYSTEINE | F - 115 |
1v39_*_109 | 1v39 | * | SAHS-ADENOSYL-L-HOMOCYSTEINE | V - 116 |
1v39_*_109 | 1v39 | * | SAHS-ADENOSYL-L-HOMOCYSTEINE | D - 117 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1ols_B_69 | 1ols | B | TDPTDP BINDING SITE FOR CHAIN A | L - 74 |
1ols_B_69 | 1ols | B | TDPTDP BINDING SITE FOR CHAIN A | E - 76 |
Clusters included in this Subclass |
CLUSTER: EH.5.78 |