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Information on SUBCLASS 3.8.4
Subclass Accession number: 2954
Subclass: 3.8.4 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 17.0 +/- 21.3
Average RMSD (Å) : 0.971 +/- 0.170

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXhXppp
(φψ)-conformation: bbppbaa
Pattern: [lv][FIMVY]x[aert][dp]x[CDST][der][AEQS][adg][filv]x[egns][AFGIT][agikv]x
Conservation:2.2741.027-1.005-0.4081.302-0.6440.5610.3670.894-0.235-0.005-0.227-0.550-0.960-1.359-1.030
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a9x_A_6151a9x   A616631LYFEPVTLEDVLEIVREE----SHHHHHHHHHbbxbxxbaaaaaaaaa
1gt9_1_941gt9   197112VYFAPNTDAGFLNAITEEE--SSHHHHHHHHHbxxbxxbaaaaaaaaa
1jak_A_431jak   A4357.IRVDDSREARRVGDY.EE--SSHHHHHHHHH.bxbxxbaaaaaaaaa
1ols_B_691ols   B6984VFNTPLCEQGIVGFGIEEE--S-HHHHHHHHHbbxbxxbaaaaaaaaa
1qs0_B_551qs0   B5570VFDAPISESGIVGTAVEEE--S-HHHHHHHHHbbxbxxbaaaaaaaaa
1umd_B_531umd   B5368VMDTPLSEAAIVGAALEEE--S-HHHHHHHHHbbxbxxbaaaaaaaaa
1v39_*_1091v39   -111126LVTRFVDEEYLRSIKKEEE----HHHHHHHHHxbbbxxbaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1qs0_B_551qs0   B     MSESELENOMETHIONINE F - 56
1qs0_B_551qs0   B     MSESELENOMETHIONINE V - 66
1qs0_B_551qs0   B     MSESELENOMETHIONINE G - 67
1qs0_B_551qs0   B     MSESELENOMETHIONINE T - 68
1qs0_B_551qs0   B     MSESELENOMETHIONINE A - 69
1qs0_B_551qs0   B     MSESELENOMETHIONINE V - 70
1umd_B_531umd   B     TDPTHIAMIN DIPHOSPHATE L - 58
1umd_B_531umd   B     TDPTHIAMIN DIPHOSPHATE E - 60
1v39_*_1091v39   *     SAHS-ADENOSYL-L-HOMOCYSTEINE R - 114
1v39_*_1091v39   *     SAHS-ADENOSYL-L-HOMOCYSTEINE F - 115
1v39_*_1091v39   *     SAHS-ADENOSYL-L-HOMOCYSTEINE V - 116
1v39_*_1091v39   *     SAHS-ADENOSYL-L-HOMOCYSTEINE D - 117
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ols_B_691ols   B TDPTDP BINDING SITE FOR CHAIN AL - 74
1ols_B_691ols   B TDPTDP BINDING SITE FOR CHAIN AE - 76

Clusters included in this Subclass
CLUSTER: EH.5.78