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Information on SUBCLASS 3.12.1
Subclass Accession number: 2972
Subclass: 3.12.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 15.6 +/- 14.4
Average RMSD (Å) : 0.929 +/- 0.335

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXXXGXX
(φψ)-conformation: bbppeaa
Pattern: [FMPT][ILVW][AGITV]x[adet][gikmt][G][cdrs]xx[fhilv][gpvwy][AGIV]x
Conservation:-0.0660.549-0.011-0.528-0.264-0.5423.235-0.529-0.187-0.856-0.233-0.5540.291-0.305
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1f32_A_251f32   A2639PWTMLEGDDIQVGKEEEE--GGGHHHHHwabbxbeaaaaaaa
1hhs_A_4541hhs   A456469MLGWTKGRALVGGHEEEE-SSTTHHHHHbbbbxxeaaaaaaa
1kek_A_8321kek   A833846FIANATGCSSIWGAEEEE-SSHHHHHHHbbxbxxeaaaaaaa
1ozh_A_3881ozh   A389402TLTVDMGSFHIWIAEEEE-SSHHHHHHHxbbbxbeaaaaaaa
1pbt_A_351pbt   A3649FVVLAGGRTPLPVYEEEE--STTHHHHHbbxbxxeaaaaaaa
1upa_A_4051upa   A405418TIVSDIGFFRHYGVEEEE-SSHHHHHHHbbbbxbeaaaaaaa
1zpd_A_3821zpd   A383396TVIAETGDSWFNAQEEEE-SSHHHHHHHbbxbxpeaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1hhs_A_4541hhs   A     MNMANGANESE (II) ION D - 454
1hhs_A_4541hhs   A     MNMANGANESE (II) ION A - 455
1hhs_A_4541hhs   A     MNMANGANESE (II) ION M - 456
1kek_A_8321kek   A     HTL2-ACETYL-THIAMINE DIPHOSPHATE A - 837
1kek_A_8321kek   A     HTL2-ACETYL-THIAMINE DIPHOSPHATE T - 838
1kek_A_8321kek   A     HTL2-ACETYL-THIAMINE DIPHOSPHATE G - 839
1kek_A_8321kek   A     FS4IRON/SULFUR CLUSTER C - 840
1kek_A_8321kek   A     HTL2-ACETYL-THIAMINE DIPHOSPHATE C - 840
1kek_A_8321kek   A     HTL2-ACETYL-THIAMINE DIPHOSPHATE S - 841
1kek_A_8321kek   A     HTL2-ACETYL-THIAMINE DIPHOSPHATE S - 842
1kek_A_8321kek   A     HTL2-ACETYL-THIAMINE DIPHOSPHATE I - 843
1kek_A_8321kek   A     FS4IRON/SULFUR CLUSTER W - 844
1ozh_A_3881ozh   A     HE32-HYDROXYETHYL DIHYDROTHIACHROME DIPHOSPHATE D - 393
1ozh_A_3881ozh   A     HE32-HYDROXYETHYL DIHYDROTHIACHROME DIPHOSPHATE M - 394
1ozh_A_3881ozh   A     HE32-HYDROXYETHYL DIHYDROTHIACHROME DIPHOSPHATE G - 395
1ozh_A_3881ozh   A     HE32-HYDROXYETHYL DIHYDROTHIACHROME DIPHOSPHATE S - 396
1ozh_A_3881ozh   A     HE32-HYDROXYETHYL DIHYDROTHIACHROME DIPHOSPHATE F - 397
1ozh_A_3881ozh   A     PO4PHOSPHATE ION I - 401
1ozh_A_3881ozh   A     PO4PHOSPHATE ION A - 402
1ozh_A_3881ozh   A     PO4PHOSPHATE ION R - 403
1pbt_A_351pbt   A     MSESELENOMETHIONINE I - 35
1pbt_A_351pbt   A     MSESELENOMETHIONINE V - 37
1pbt_A_351pbt   A     MSESELENOMETHIONINE L - 52
1upa_A_4051upa   A     MSESELENOMETHIONINE T - 405
1upa_A_4051upa   A     MSESELENOMETHIONINE I - 406
1upa_A_4051upa   A     MSESELENOMETHIONINE V - 407
1upa_A_4051upa   A     TPPTHIAMINE DIPHOSPHATE D - 409
1upa_A_4051upa   A     TPPTHIAMINE DIPHOSPHATE I - 410
1upa_A_4051upa   A     TPPTHIAMINE DIPHOSPHATE G - 411
1upa_A_4051upa   A     TPPTHIAMINE DIPHOSPHATE F - 412
1upa_A_4051upa   A     TPPTHIAMINE DIPHOSPHATE F - 413
1upa_A_4051upa   A     TPPTHIAMINE DIPHOSPHATE R - 414
1upa_A_4051upa   A     MSESELENOMETHIONINE L - 419
1zpd_A_3821zpd   A     DPXMONO-{4-[(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-AMINO]-2-HYDROXY-3-MERCAPTO-PENT-3-ENYL-PHOSPHONO} ESTER E - 387
1zpd_A_3821zpd   A     DPXMONO-{4-[(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-AMINO]-2-HYDROXY-3-MERCAPTO-PENT-3-ENYL-PHOSPHONO} ESTER T - 388
1zpd_A_3821zpd   A     DPXMONO-{4-[(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-AMINO]-2-HYDROXY-3-MERCAPTO-PENT-3-ENYL-PHOSPHONO} ESTER G - 389
1zpd_A_3821zpd   A     DPXMONO-{4-[(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-AMINO]-2-HYDROXY-3-MERCAPTO-PENT-3-ENYL-PHOSPHONO} ESTER D - 390
1zpd_A_3821zpd   A     DPXMONO-{4-[(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-AMINO]-2-HYDROXY-3-MERCAPTO-PENT-3-ENYL-PHOSPHONO} ESTER S - 391
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1hhs_A_4541hhs   A CA1THE THREE CONSERVED ACTIVE SITE ASPARTATESD - 454
1upa_A_4051upa   A AC1TPP BINDING SITE FOR CHAIN AI - 410
1upa_A_4051upa   A AC1TPP BINDING SITE FOR CHAIN AG - 411
1upa_A_4051upa   A AC3SO4 BINDING SITE FOR CHAIN AR - 414
1upa_A_4051upa   A AC3SO4 BINDING SITE FOR CHAIN AH - 415

Clusters included in this Subclass
CLUSTER: EH.4.87