ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.16.1

Subclass Accession number: 2982
Subclass: 3.16.1

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 6

Average sequence ID (%) : 23.8 +/- 22.5
Average RMSD (Å) : 0.567 +/- 0.333

Consensus geometry

d (Å): 7

delta (°): 45-90

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	XXXGpXX
(φψ)-conformation:	bpplpaa

Pattern:	[efhr]	[ILV]	[ADGT]	[TV]	[gklv]	[aqrs]	[DG]	[GST]	[GTV]	[AQST]	x	[ADT]	[FGWY]	[AGY]	[AKNS]	[adep]
Conservation:	-0.937	1.509	-0.506	0.957	-1.567	-0.477	2.199	0.469	-0.359	-0.074	-0.829	-0.142	0.763	0.073	0.137	-1.218

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ghe_A_126	1ghe	A	128	143	HLDTEAGSVAEAFYSA	EEEEETTSHHHHHHHH	bbbbpxvxaaaaaaaa
1hsl_A_113	1hsl	A	113	128	RVGVLQGTTQETFGNE	EEEEETTSHHHHHHHH	xbxbxpvxaaaaaaaa
1ii5_A_118	1ii5	A	118	133	EVAVVRDTTAVDWANF	EEEEETTSHHHHHHHH	xbxbxplbaaaaaaaa
1lst_*_113	1lst	-	113	128	HVGVLQGSTQEAYAND	EEEEETTSHHHHHHHH	bbxbxxvxaaaaaaaa
1ofu_A_98	1ofu	A	100	115	FITTGMGGGTGTGAAP	EEEEETTSSHHHHHHH	bbbbxxgxaaaaaaaa
1wdn_A_111	1wdn	A	111	126	VVAVKSGTGSVDYAKA	EEEEETTSHHHHHHHH	xbxbbpvbaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ghe_A_126	1ghe	A	MSESELENOMETHIONINE	L - 127
1ghe_A_126	1ghe	A	MSESELENOMETHIONINE	L - 129
1ghe_A_126	1ghe	A	ACOACETYL COENZYME *A	L - 129
1ghe_A_126	1ghe	A	ACOACETYL COENZYME *A	D - 130
1ghe_A_126	1ghe	A	ACOACETYL COENZYME *A	T - 131
1ghe_A_126	1ghe	A	ACOACETYL COENZYME *A	E - 132
1ghe_A_126	1ghe	A	ACOACETYL COENZYME *A	S - 135
1ghe_A_126	1ghe	A	ACOACETYL COENZYME *A	V - 136
1ghe_A_126	1ghe	A	ACOACETYL COENZYME *A	A - 137
1ghe_A_126	1ghe	A	ACOACETYL COENZYME *A	A - 139
1ghe_A_126	1ghe	A	MSESELENOMETHIONINE	F - 140
1ghe_A_126	1ghe	A	ACOACETYL COENZYME *A	F - 140
1ghe_A_126	1ghe	A	MSESELENOMETHIONINE	Y - 141
1ghe_A_126	1ghe	A	ACOACETYL COENZYME *A	Y - 141
1ghe_A_126	1ghe	A	ACOACETYL COENZYME *A	A - 143
1hsl_A_113	1hsl	A	CDCADMIUM ION	F - 125
1hsl_A_113	1hsl	A	CDCADMIUM ION	E - 128
1hsl_A_113	1hsl	A	CDCADMIUM ION	H - 129
1ii5_A_118	1ii5	A	GLUGLUTAMIC ACID	D - 124
1ii5_A_118	1ii5	A	GLUGLUTAMIC ACID	T - 125
1ii5_A_118	1ii5	A	GLUGLUTAMIC ACID	T - 126
1ii5_A_118	1ii5	A	GLUGLUTAMIC ACID	A - 127
1ofu_A_98	1ofu	A	GDPGUANOSINE-5'-DIPHOSPHATE	T - 103
1ofu_A_98	1ofu	A	GDPGUANOSINE-5'-DIPHOSPHATE	G - 104
1ofu_A_98	1ofu	A	GDPGUANOSINE-5'-DIPHOSPHATE	M - 105
1ofu_A_98	1ofu	A	GDPGUANOSINE-5'-DIPHOSPHATE	G - 106
1ofu_A_98	1ofu	A	GDPGUANOSINE-5'-DIPHOSPHATE	G - 107
1ofu_A_98	1ofu	A	GDPGUANOSINE-5'-DIPHOSPHATE	G - 108
1ofu_A_98	1ofu	A	GDPGUANOSINE-5'-DIPHOSPHATE	T - 109
1ofu_A_98	1ofu	A	GDPGUANOSINE-5'-DIPHOSPHATE	G - 110
1ofu_A_98	1ofu	A	GDPGUANOSINE-5'-DIPHOSPHATE	T - 111

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1ofu_A_98	1ofu	A	AC1GDP BINDING SITE FOR CHAIN A	G - 104

Clusters included in this Subclass

CLUSTER: EH.3.141