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Information on SUBCLASS 3.18.1
Subclass Accession number: 2989
Subclass: 3.18.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 22.9 +/- 25.6
Average RMSD (Å) : 0.450 +/- 0.120

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: hpXpGpp
(φψ)-conformation: bbaagaa
Pattern: [HILMV][AFILV][LVY][AGLPW][STV][EGNQT][gnst][AG][GKNRT][ANST][ae][ehkrty][aflmt][av][aenr]
Conservation:0.2470.3150.665-1.3880.613-0.242-0.1622.867-0.2990.472-0.287-0.923-0.827-0.130-0.920
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a49_A_4261a49   A427441LIVLTESGRSAHQVAEEEE-SSSHHHHHHHbbbbbaavaaaaaaa
1bvy_F_4821bvy   F484498VLYGSNMGTAEGTAREEEE-SSSHHHHHHHbbbbbaavaaaaaaa
1e0t_A_3741e0t   A374388IVVATQGGKSARAVREEEE-SSSHHHHHHHbxbbbaavaaaaaaa
1f4p_A_31f4p   A620IVYGSTTGNTEYTAEEEEE-SSSHHHHHHHbbbbbaagaaaaaaa
1ja1_A_801ja1   A8296VFYGSQTGTAEEFANEEEE-SSSHHHHHHHbxbbbaavaaaaaaa
1pkl_A_3961pkl   A396410MVVLSNTGRSARLVAEEEE-SSSHHHHHHHbbbxbaavaaaaaaa
1v7c_A_1811v7c   A182196HALPVGNAGNITAHWEEEE-SSSHHHHHHHbbbxbaavaaaaaaa
5nul_*_25nul   -317IVYWSGTGNTEKMAEEEEE-SSSHHHHHHHbbbbbaagaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bvy_F_4821bvy   F     FMNFLAVIN MONONUCLEOTIDE G - 487
1bvy_F_4821bvy   F     FMNFLAVIN MONONUCLEOTIDE S - 488
1bvy_F_4821bvy   F     FMNFLAVIN MONONUCLEOTIDE N - 489
1bvy_F_4821bvy   F     FMNFLAVIN MONONUCLEOTIDE M - 490
1bvy_F_4821bvy   F     FMNFLAVIN MONONUCLEOTIDE G - 491
1bvy_F_4821bvy   F     FMNFLAVIN MONONUCLEOTIDE T - 492
1bvy_F_4821bvy   F     EDO1,2-ETHANEDIOL T - 492
1bvy_F_4821bvy   F     FMNFLAVIN MONONUCLEOTIDE A - 493
1bvy_F_4821bvy   F     FMNFLAVIN MONONUCLEOTIDE E - 494
1bvy_F_4821bvy   F     EDO1,2-ETHANEDIOL G - 495
1bvy_F_4821bvy   F     EDO1,2-ETHANEDIOL T - 496
1bvy_F_4821bvy   F     EDO1,2-ETHANEDIOL D - 499
1f4p_A_31f4p   A     FMNFLAVIN MONONUCLEOTIDE G - 9
1f4p_A_31f4p   A     FMNFLAVIN MONONUCLEOTIDE S - 10
1f4p_A_31f4p   A     FMNFLAVIN MONONUCLEOTIDE T - 11
1f4p_A_31f4p   A     FMNFLAVIN MONONUCLEOTIDE T - 12
1f4p_A_31f4p   A     FMNFLAVIN MONONUCLEOTIDE G - 13
1f4p_A_31f4p   A     FMNFLAVIN MONONUCLEOTIDE N - 14
1f4p_A_31f4p   A     FMNFLAVIN MONONUCLEOTIDE T - 15
1f4p_A_31f4p   A     FMNFLAVIN MONONUCLEOTIDE E - 16
1ja1_A_801ja1   A     FMNFLAVIN MONONUCLEOTIDE G - 85
1ja1_A_801ja1   A     FMNFLAVIN MONONUCLEOTIDE S - 86
1ja1_A_801ja1   A     FMNFLAVIN MONONUCLEOTIDE Q - 87
1ja1_A_801ja1   A     FMNFLAVIN MONONUCLEOTIDE T - 88
1ja1_A_801ja1   A     FMNFLAVIN MONONUCLEOTIDE G - 89
1ja1_A_801ja1   A     FMNFLAVIN MONONUCLEOTIDE T - 90
1ja1_A_801ja1   A     FMNFLAVIN MONONUCLEOTIDE A - 91
1ja1_A_801ja1   A     FMNFLAVIN MONONUCLEOTIDE E - 92
1v7c_A_1811v7c   A     HEY(2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)AMINO]-5-PHOSPHONOPENT-2-ENOIC ACID P - 185
1v7c_A_1811v7c   A     HEY(2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)AMINO]-5-PHOSPHONOPENT-2-ENOIC ACID V - 186
1v7c_A_1811v7c   A     HEY(2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)AMINO]-5-PHOSPHONOPENT-2-ENOIC ACID G - 187
1v7c_A_1811v7c   A     HEY(2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)AMINO]-5-PHOSPHONOPENT-2-ENOIC ACID N - 188
1v7c_A_1811v7c   A     HEY(2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)AMINO]-5-PHOSPHONOPENT-2-ENOIC ACID A - 189
1v7c_A_1811v7c   A     HEY(2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)AMINO]-5-PHOSPHONOPENT-2-ENOIC ACID G - 190
1v7c_A_1811v7c   A     HEY(2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)AMINO]-5-PHOSPHONOPENT-2-ENOIC ACID N - 191
1v7c_A_1811v7c   A     HEY(2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)AMINO]-5-PHOSPHONOPENT-2-ENOIC ACID I - 192
5nul_*_25nul   *     FMNFLAVIN MONONUCLEOTIDE W - 6
5nul_*_25nul   *     FMNFLAVIN MONONUCLEOTIDE S - 7
5nul_*_25nul   *     FMNFLAVIN MONONUCLEOTIDE G - 8
5nul_*_25nul   *     FMNFLAVIN MONONUCLEOTIDE T - 9
5nul_*_25nul   *     FMNFLAVIN MONONUCLEOTIDE G - 10
5nul_*_25nul   *     FMNFLAVIN MONONUCLEOTIDE N - 11
5nul_*_25nul   *     FMNFLAVIN MONONUCLEOTIDE E - 13

Clusters included in this Subclass
CLUSTER: EH.3.86