ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.38.1

Subclass Accession number: 3013
Subclass: 3.38.1

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 6

Average sequence ID (%) : 52.9 +/- 24.1
Average RMSD (Å) : 0.300 +/- 0.200

Consensus geometry

d (Å): 7

delta (°): 45-90

theta (°): 45-90

rho (°): 135-180

Consensus Sequence:	hAphYLh
(φψ)-conformation:	abllpaa

Pattern:	[GILM]	[V]	[EY]	[ILV]	[HMY]	[AGS]	[AS]	[EHN]	[AGS]	[CY]	[L]	[ILP]	[dhn]	[EQ]	[F]	[LM]
Conservation:	-1.742	0.906	-0.349	0.047	-0.082	-0.414	0.024	0.020	-0.434	0.464	0.906	-1.328	-1.401	0.715	2.288	0.379

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1gvo_A_177	1gvo	A	177	192	LVELHSAHGYLLHQFL	EEEEEE-TTSHHHHHH	bbbxxablvxaaaaaa
1gwj_A_182	1gwj	A	182	197	MVEVHAANACLPNQFL	EEEEEE-TT-HHHHHH	bbbxxabllxaaaaaa
1icp_A_183	1icp	A	183	198	GVEIHGAHGYLIDQFM	EEEEEE-TTSHHHHHH	bbbxxablvxaaaaaa
1o94_A_165	1o94	A	165	180	IVYVYGAHSYLPLQFL	EEEEEE-TT-HHHHHH	bbxxxabllxaaaaaa
1ps9_A_157	1ps9	A	157	172	GVEVMGSEGYLINEFL	EEEEEE-BTSHHHHHH	ebbxxabUvxaaaaaa
1vji_A_179	1vji	A	179	194	GVEIHGANGYLIDQFM	EEEEEE-TTSHHHHHH	bbbxxablvxaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gvo_A_177	1gvo	A	FMNFLAVIN MONONUCLEOTIDE	E - 179
1gvo_A_177	1gvo	A	FMNFLAVIN MONONUCLEOTIDE	H - 181
1gvo_A_177	1gvo	A	DNF2,4-DINITROPHENOL	H - 181
1gvo_A_177	1gvo	A	FMNFLAVIN MONONUCLEOTIDE	A - 183
1gvo_A_177	1gvo	A	DNF2,4-DINITROPHENOL	A - 183
1gvo_A_177	1gvo	A	FMNFLAVIN MONONUCLEOTIDE	H - 184
1gvo_A_177	1gvo	A	DNF2,4-DINITROPHENOL	H - 184
1gvo_A_177	1gvo	A	FMNFLAVIN MONONUCLEOTIDE	Y - 186
1gvo_A_177	1gvo	A	DNF2,4-DINITROPHENOL	Y - 186
1gwj_A_182	1gwj	A	FMNFLAVIN MONONUCLEOTIDE	E - 184
1gwj_A_182	1gwj	A	FMNFLAVIN MONONUCLEOTIDE	H - 186
1gwj_A_182	1gwj	A	FMNFLAVIN MONONUCLEOTIDE	A - 188
1gwj_A_182	1gwj	A	FMNFLAVIN MONONUCLEOTIDE	N - 189
1icp_A_183	1icp	A	FMNFLAVIN MONONUCLEOTIDE	E - 185
1icp_A_183	1icp	A	FMNFLAVIN MONONUCLEOTIDE	H - 187
1icp_A_183	1icp	A	2PENONAETHYLENE GLYCOL	H - 187
1icp_A_183	1icp	A	FMNFLAVIN MONONUCLEOTIDE	A - 189
1icp_A_183	1icp	A	FMNFLAVIN MONONUCLEOTIDE	H - 190
1icp_A_183	1icp	A	2PENONAETHYLENE GLYCOL	H - 190
1icp_A_183	1icp	A	2PENONAETHYLENE GLYCOL	Y - 192
1o94_A_165	1o94	A	FMNFLAVIN MONONUCLEOTIDE	Y - 169
1o94_A_165	1o94	A	FMNFLAVIN MONONUCLEOTIDE	A - 171
1o94_A_165	1o94	A	FMNFLAVIN MONONUCLEOTIDE	H - 172
1ps9_A_157	1ps9	A	FMNFLAVIN MONONUCLEOTIDE	E - 159
1ps9_A_157	1ps9	A	FMNFLAVIN MONONUCLEOTIDE	M - 161
1ps9_A_157	1ps9	A	MDE5-MERCAPTOETHANOL-2-DECENOYL-COENZYME A	M - 161
1ps9_A_157	1ps9	A	FMNFLAVIN MONONUCLEOTIDE	S - 163
1ps9_A_157	1ps9	A	MDE5-MERCAPTOETHANOL-2-DECENOYL-COENZYME A	E - 164
1ps9_A_157	1ps9	A	FMNFLAVIN MONONUCLEOTIDE	Y - 166
1ps9_A_157	1ps9	A	MDE5-MERCAPTOETHANOL-2-DECENOYL-COENZYME A	Y - 166
1vji_A_179	1vji	A	FMNFLAVIN MONONUCLEOTIDE	E - 181
1vji_A_179	1vji	A	FMNFLAVIN MONONUCLEOTIDE	H - 183
1vji_A_179	1vji	A	FMNFLAVIN MONONUCLEOTIDE	A - 185
1vji_A_179	1vji	A	FMNFLAVIN MONONUCLEOTIDE	N - 186

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gvo_A_177	1gvo	A	AC1FMN BINDING SITE FOR CHAIN A	H - 181
1gvo_A_177	1gvo	A	AC1FMN BINDING SITE FOR CHAIN A	H - 184

Clusters included in this Subclass

CLUSTER: EH.3.136