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Information on SUBCLASS 4.2.1
Subclass Accession number: 3039
Subclass: 4.2.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 40

Average sequence ID (%) : 9.2 +/- 12.8
Average RMSD (Å) : 0.805 +/- 0.278

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: hXXXXpXp
(φψ)-conformation: bbaappaa
Pattern: [acfgikltv][acfgiklmtv]xx[adegknst]x[dehnprst]x[adegknqrst]xxx
Conservation:0.8960.447-0.764-0.1210.5710.2350.493-1.4112.129-1.142-0.494-0.838
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a04_A_1051a04   A106117YLLKDMEPEDLLEEETT--HHHHHbbxaaxxaaaaa
1a4s_A_2691a4s   A271282LIFKDCELENAVEE-TTS-HHHHHbbxaaxxaaaaa
1bs0_A_1251bs0   A127138AADRLSHASLLEEEETT--HHHHHbbpaapxaaaaa
1bxs_A_2741bxs   A276287IVFADADLDNAVEE-TTS-HHHHHxbxaaxxaaaaa
1cl1_A_1031cl1   A105116LMTNTAYEPSQDEEETTS-HHHHHbbxaaxpaaaaa
1cs1_A_931cs1   A95106VAPHDCYGGSYREEETT--HHHHHbbxaaxpaaaaa
1e4m_M_4141e4m   M414424.TPGDENRNQSM.EETTS-HHHHH.bxaaxxaaaaa
1e79_A_2291e79   A233244SATASDAAPLQYEE-TTS-HHHHHbbxaaxpaaaaa
1e79_D_2151e79   D219230YGQMNEPPGARAEE-TTS-HHHHHbbxaaxxaaaaa
1eg5_A_911eg5   A93104ITTPIEHKAVLEEE-TTS-HHHHHbbbaaxxaaaaa
1elu_A_1061elu   A108119LLTDCEHPGIIAEEETT--HHHHHbbxaaxxaaaaa
1euh_A_2551euh   A258269IVLEDADLELTAEE-TTS-HHHHHxbxaaxxaaaaa
1ewk_A_2541ewk   A260271KIYSNAGEKSFDEE-TT--HHHHHbbxaaxxaaaaa
1fc4_A_1281fc4   A130141ISDALNHASIIDEEETT--HHHHHbbxaapxaaaaa
1g62_A_241g62   A2536LVAVGGSENFYSEEETT--HHHHHbbxaaxxaaaaa
1h16_A_3701h16   A374385LWSEKLPLNFKKEE-TTS-HHHHHxxbaaxxaaaaa
1h7m_A_341h7m   A3647IVARNARPDIKEEEETTS-HHHHHbbxaaxpaaaaa
1i0r_A_611i0r   A6677VLELETPMEFIGEEBTT--HHHHHxxxaaxxaaaaa
1ibj_A_1731ibj   A175186VAGDDVYGGSDREEESS--HHHHHbbpaappaaaaa
1jx6_A_3401jx6   A342353IVTKADSPERIEEEETTS-HHHHHxbbaaxxaaaaa
1k3s_A_851k3s   A8595.LPQTSTEEEAL.EETTS-HHHHH.bpaaxxaaaaa
1kzy_C_19191kzy   C19211932VTDPSCPASVLKEE-TT--HHHHHbbbaaxxaaaaa
1l6r_A_1871l6r   A189200ACPANATDNIKAEE-TTS-HHHHHbbxaaxxaaaaa
1nbw_B_861nbw   B8798TGHVTDSDDQLREEETTS-HHHHHbbbaaxxaaaaa
1o04_A_2731o04   A276287IIMSDADMDWAVEE-TTS-HHHHHbbxaaxxaaaaa
1o1z_A_581o1z   A6071VKIRDATVSELKEEGGGS-HHHHHbxaaabxaaaaa
1o20_A_2271o20   A230241FVDESADLKKAVEE-TTS-HHHHHbxxaapxaaaaa
1oas_A_871oas   A90101TMPETMSIERRKEEETTS-HHHHHbbxaappaaaaa
1od6_A_851od6   A89100GLRAVSDYEYELEE-TTS-HHHHHxbbaapxaaaaa
1oyw_A_2631oyw   A265276AYHAGLENNVRAEE-TTS-HHHHHxbbaaxxaaaaa
1oyw_A_921oyw   A94105CLNSTQTREQQLEE-TTS-HHHHHbbbaaxxaaaaa
1p3w_A_961p3w   A98109ITSKTEHKAVLDEEETTS-HHHHHbbbaaxxaaaaa
1qop_A_1531qop   A153164ICPPNADDDLLREE-TT--HHHHHxbxaNpxaaaaa
1qz9_A_1211qz9   A123134VTETSNFPTDLYEEETTS-HHHHHxbbaaxpaaaaa
1rkd_*_1371rkd   -139150LMQLESPLESVMEE-SSS-HHHHHbbbaabpaaaaa
1tig_*_851tig   -89100RLSPTIEEHDFNEE-TT--HHHHHxbxaaxxaaaaa
1uzb_A_2931uzb   A296307IVDETADFDLAAEE-TTS-HHHHHbbbaaxxaaaaa
1vec_A_1851vec   A187198ATTGGTNLRDDIEE-SSS-HHHHHbbbaapxaaaaa
2ncd_A_4002ncd   A401412VFHPLSSQSDIFEE-TT--HHHHHbbxaaxxaaaaa
7a3h_A_1957a3h   A200211HFYAGTHGQNLREEETTS--HHHHbbbaaxxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cl1_A_1031cl1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) Y - 111
1cl1_A_1031cl1   A     BCTBICARBONATE ION Y - 111
1cl1_A_1031cl1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) S - 114
1cs1_A_931cs1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) Y - 101
1cs1_A_931cs1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) S - 104
1eg5_A_911eg5   A     MSESELENOMETHIONINE I - 92
1eg5_A_911eg5   A     MSESELENOMETHIONINE I - 93
1eg5_A_911eg5   A     MSESELENOMETHIONINE T - 94
1eg5_A_911eg5   A     MSESELENOMETHIONINE T - 95
1eg5_A_911eg5   A     MSESELENOMETHIONINE I - 97
1eg5_A_911eg5   A     MSESELENOMETHIONINE E - 98
1eg5_A_911eg5   A     MSESELENOMETHIONINE H - 99
1eg5_A_911eg5   A     PLPPYRIDOXAL-5'-PHOSPHATE H - 99
1eg5_A_911eg5   A     MSESELENOMETHIONINE A - 101
1eg5_A_911eg5   A     PLPPYRIDOXAL-5'-PHOSPHATE A - 101
1eg5_A_911eg5   A     MSESELENOMETHIONINE V - 102
1eg5_A_911eg5   A     MSESELENOMETHIONINE L - 103
1eg5_A_911eg5   A     MSESELENOMETHIONINE E - 104
1elu_A_1061elu   A     PDA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID C - 112
1elu_A_1061elu   A     PDA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID E - 113
1elu_A_1061elu   A     PDA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID H - 114
1elu_A_1061elu   A     CSSS-MERCAPTOCYSTEINE H - 114
1elu_A_1061elu   A     CSSS-MERCAPTOCYSTEINE P - 115
1elu_A_1061elu   A     CSSS-MERCAPTOCYSTEINE G - 116
1elu_A_1061elu   A     PDA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID I - 117
1ewk_A_2541ewk   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID Y - 262
1ewk_A_2541ewk   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID S - 263
1ewk_A_2541ewk   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID N - 264
1fc4_A_1281fc4   A     MSESELENOMETHIONINE D - 132
1fc4_A_1281fc4   A     AKB2-AMINO-3-KETOBUTYRIC ACID H - 136
1fc4_A_1281fc4   A     PLPPYRIDOXAL-5'-PHOSPHATE H - 136
1fc4_A_1281fc4   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 138
1fc4_A_1281fc4   A     MSESELENOMETHIONINE I - 139
1fc4_A_1281fc4   A     PLPPYRIDOXAL-5'-PHOSPHATE I - 139
1h16_A_3701h16   A     PG4TETRAETHYLENE GLYCOL F - 386
1i0r_A_611i0r   A     FMNFLAVIN MONONUCLEOTIDE I - 76
1i0r_A_611i0r   A     FMNFLAVIN MONONUCLEOTIDE F - 79
1i0r_A_611i0r   A     FMNFLAVIN MONONUCLEOTIDE G - 80
1ibj_A_1731ibj   A     CO3CARBONATE ION Y - 181
1ibj_A_1731ibj   A     PLPPYRIDOXAL-5'-PHOSPHATE Y - 181
1ibj_A_1731ibj   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 184
1k3s_A_851k3s   A     MSESELENOMETHIONINE L - 85
1k3s_A_851k3s   A     MSESELENOMETHIONINE E - 93
1k3s_A_851k3s   A     MSESELENOMETHIONINE A - 94
1k3s_A_851k3s   A     MSESELENOMETHIONINE L - 95
1k3s_A_851k3s   A     MSESELENOMETHIONINE G - 97
1k3s_A_851k3s   A     MSESELENOMETHIONINE F - 98
1k3s_A_851k3s   A     MSESELENOMETHIONINE E - 99
1k3s_A_851k3s   A     MSESELENOMETHIONINE F - 101
1k3s_A_851k3s   A     MSESELENOMETHIONINE K - 109
1k3s_A_851k3s   A     MSESELENOMETHIONINE Y - 112
1l6r_A_1871l6r   A     CACALCIUM ION P - 191
1l6r_A_1871l6r   A     CACALCIUM ION N - 193
1od6_A_851od6   A     PNS4'-PHOSPHOPANTETHEINE K - 88
1od6_A_851od6   A     PNS4'-PHOSPHOPANTETHEINE Y - 98
1od6_A_851od6   A     PNS4'-PHOSPHOPANTETHEINE E - 99
1od6_A_851od6   A     PNS4'-PHOSPHOPANTETHEINE Q - 101
1od6_A_851od6   A     PNS4'-PHOSPHOPANTETHEINE M - 102
1od6_A_851od6   A     PNS4'-PHOSPHOPANTETHEINE A - 103
1od6_A_851od6   A     PNS4'-PHOSPHOPANTETHEINE L - 105
1od6_A_851od6   A     PNS4'-PHOSPHOPANTETHEINE N - 106
1od6_A_851od6   A     PNS4'-PHOSPHOPANTETHEINE L - 109
1oyw_A_921oyw   A     MSESELENOMETHIONINE C - 94
1oyw_A_921oyw   A     MSESELENOMETHIONINE N - 96
1oyw_A_921oyw   A     MSESELENOMETHIONINE Q - 99
1oyw_A_921oyw   A     MSESELENOMETHIONINE R - 101
1oyw_A_921oyw   A     MSESELENOMETHIONINE Q - 103
1oyw_A_921oyw   A     MSESELENOMETHIONINE Q - 104
1oyw_A_921oyw   A     MSESELENOMETHIONINE L - 105
1oyw_A_921oyw   A     MSESELENOMETHIONINE E - 106
1p3w_A_961p3w   A     PLPPYRIDOXAL-5'-PHOSPHATE H - 104
1p3w_A_961p3w   A     PLPPYRIDOXAL-5'-PHOSPHATE A - 106
1qop_A_1531qop   A     IPLINDOLE-3-PROPANOL PHOSPHATE I - 153
1qz9_A_1211qz9   A     PLPPYRIDOXAL-5'-PHOSPHATE N - 128
1qz9_A_1211qz9   A     PLPPYRIDOXAL-5'-PHOSPHATE F - 129
1qz9_A_1211qz9   A     P3G3,6,9,12,15-PENTAOXAHEPTADECANE F - 129
1qz9_A_1211qz9   A     P3G3,6,9,12,15-PENTAOXAHEPTADECANE P - 130
1qz9_A_1211qz9   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 131
1qz9_A_1211qz9   A     P3G3,6,9,12,15-PENTAOXAHEPTADECANE T - 131
1qz9_A_1211qz9   A     PLPPYRIDOXAL-5'-PHOSPHATE D - 132
1qz9_A_1211qz9   A     PLPPYRIDOXAL-5'-PHOSPHATE I - 135
1rkd_*_1371rkd   *     RIBRIBOSE E - 143
2ncd_A_4002ncd   A     ADPADENOSINE-5'-DIPHOSPHATE P - 404
2ncd_A_4002ncd   A     ADPADENOSINE-5'-DIPHOSPHATE S - 406
2ncd_A_4002ncd   A     ADPADENOSINE-5'-DIPHOSPHATE Q - 408
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1a04_A_1051a04   A 1PHOSPHORYLATION SITE.K - 109
1od6_A_851od6   A AC3SO4 BINDING SITE FOR CHAIN AR - 91
1od6_A_851od6   A AC2SO4 BINDING SITE FOR CHAIN AH - 104
1od6_A_851od6   A AC2SO4 BINDING SITE FOR CHAIN AR - 107
1od6_A_851od6   A AC2SO4 BINDING SITE FOR CHAIN AQ - 108
1rkd_*_1371rkd   * RB1RESIDUES MAKING DIRECT HYDROGEN BONDS WITH RIBOSE.E - 143

Clusters included in this Subclass
CLUSTER: EH.3.47
CLUSTER: EH.4.142
CLUSTER: EH.4.15
CLUSTER: EH.5.405
CLUSTER: EH.6.7