ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.2.5

Subclass Accession number: 3043
Subclass: 4.2.5

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
EC : 6.3 (>75 %) 6.3.4 (>50 %) 6.3.4.14
SCOP : 56058 (>75 %) 56059 (>75 %) 56067 (>75 %)

Number of loops: 11

Average sequence ID (%) : 10.5 +/- 12.0
Average RMSD (Å) : 0.882 +/- 0.309

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 225-270

Consensus Sequence:	hXXXXpXp
(φψ)-conformation:	bpaappaa

Pattern:	[aklv]	[gilptv]	[AFILMVY]	[dprs]	x	x	[adgtv]	[degnst]	x	[aeknqs]	x	x	x	[aegkqr]
Conservation:	0.552	-0.525	1.732	0.006	-1.841	-0.851	0.503	1.179	-0.816	1.408	-0.684	-0.424	-0.531	0.293

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ds6_B_84	1ds6	B	84	96	.TMDLTGDLEALKK	.EEETTS-HHHHHH	.bbxaaxxaaaaaa
1e6t_A_75	1e6t	A	90	103	LTIPIFATNSDCEL	EEEETT--HHHHHH	bbbxaaxxaaaaaa
1f9v_A_440	1f9v	A	440	453	KIFDQQDTNVDVFK	EEE-TT--HHHHHH	bbxbaaxxaaaaaa
1g61_A_2069	1g61	A	2070	2083	LLLPKIVEDEELDR	EEEETT--HHHHHH	bbbxaapxaaaaaa
1g62_A_69	1g62	A	70	83	LLVPTQTTDQELQH	EEEETT--HHHHHH	bbbxaaxxaaaaaa
1i2a_A_131	1i2a	A	131	144	KPVPANANIKPLVE	EEE-TT---HHHHH	xwbpaaxxaaaaaa
1i7q_B_27	1i7q	B	29	42	VIYRNQIGAEVIIE	EEEETTS-HHHHHH	bbbxaaxpaaaaaa
1js3_A_182	1js3	A	185	198	AYASDQAHSSVERA	EEEETT--HHHHHH	bbbxaaxxaaaaaa
1luc_B_190	1luc	B	190	203	LVFRWDDSNAQRKE	EEE-TTS-HHHHHH	bbxxaaxxaaaaaa
1q6o_A_83	1q6o	A	84	97	VTVICCADINTAKG	EEEETTS-HHHHHH	bbbxaaxpaaaaaa
1qjc_A_85	1qjc	A	88	101	RGLRAVADFEYEMQ	EE--TT--HHHHHH	bxbxaaxxaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1f9v_A_440	1f9v	A	ADPADENOSINE-5'-DIPHOSPHATE	D - 446
1f9v_A_440	1f9v	A	ADPADENOSINE-5'-DIPHOSPHATE	T - 447
1f9v_A_440	1f9v	A	ADPADENOSINE-5'-DIPHOSPHATE	N - 448
1f9v_A_440	1f9v	A	ADPADENOSINE-5'-DIPHOSPHATE	K - 453
1f9v_A_440	1f9v	A	ADPADENOSINE-5'-DIPHOSPHATE	E - 454
1f9v_A_440	1f9v	A	ADPADENOSINE-5'-DIPHOSPHATE	V - 455
1f9v_A_440	1f9v	A	ADPADENOSINE-5'-DIPHOSPHATE	Q - 457
1f9v_A_440	1f9v	A	ADPADENOSINE-5'-DIPHOSPHATE	L - 458
1js3_A_182	1js3	A	PLPPYRIDOXAL-5'-PHOSPHATE	H - 192
1js3_A_182	1js3	A	142CARBIDOPA	H - 192
1js3_A_182	1js3	A	PLPPYRIDOXAL-5'-PHOSPHATE	S - 194

Clusters included in this Subclass

CLUSTER: EH.3.156

CLUSTER: EH.4.92

CLUSTER: EH.5.83