ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.3.2

Subclass Accession number: 3053
Subclass: 4.3.2

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 10

Average sequence ID (%) : 10.1 +/- 15.6
Average RMSD (Å) : 0.730 +/- 0.250

Consensus geometry

d (Å): 15

delta (°): 45-90

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	XXXXpphp
(φψ)-conformation:	bbpbabaa

Pattern:	[acltv]	x	[agpsv]	[cers]	x	x	x	[dkrsty]	[DNRST]	[filpt]	[ADEGKNQT]	[dekqrsy]	[filt]
Conservation:	0.705	0.834	-0.435	-0.260	-0.373	-1.582	-0.400	-0.637	2.400	-1.092	0.290	0.554	-0.004

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1dqw_A_32	1dqw	A	32	44	LCASLDVRTTKEL	EEEE---SSHHHH	xbxbbxxabaaaa
1f6d_A_322	1f6d	A	322	332	..VRLVGTDKQRI	..EE---SSHHHH	..bbxxxabaaaa
1hdr_*_49	1hdr	-	50	62	SIIVKMTDSFTEQ	EEE----S-HHHH	bbxxxxbaxaaaa
1hvx_A_260	1hvx	A	261	273	TVGEYWSYDINKL	EEE----S-HHHH	bbbbbxbaxaaaa
1nb0_A_101	1nb0	A	110	122	LRPEKNFDSLESL	EE-----SSHHHH	abwxbxbabaaaa
1o7q_A_182	1o7q	A	186	198	VFKIKPEKRWQDI	EEE----SSHHHH	bbxbxxxaxaaaa
1ob0_A_257	1ob0	A	258	270	TVAEYWSYDLGAL	EEE----S-HHHH	bbbxbxbaxaaaa
2aaa_*_226	2aaa	-	227	239	CVGEIDNGNPASD	EEE----S-HHHH	bbxxbxbabaaaa
3cla_*_102	3cla	-	105	117	ALSCPYSSDIDQF	EEE----SSHHHH	bbbbxxbaxaaaa
7taa_*_226	7taa	-	227	239	CIGEVLDGDPAYT	EEE----S-HHHH	bbxxbxbaxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1f6d_A_322	1f6d	A	MSESELENOMETHIONINE	V - 322
1f6d_A_322	1f6d	A	MSESELENOMETHIONINE	R - 323
1f6d_A_322	1f6d	A	MSESELENOMETHIONINE	L - 324
1f6d_A_322	1f6d	A	MSESELENOMETHIONINE	V - 325
1f6d_A_322	1f6d	A	MSESELENOMETHIONINE	G - 326
1f6d_A_322	1f6d	A	MSESELENOMETHIONINE	T - 327
1f6d_A_322	1f6d	A	MSESELENOMETHIONINE	I - 332
1f6d_A_322	1f6d	A	MSESELENOMETHIONINE	L - 339
1hdr_*_49	1hdr	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 53
1hdr_*_49	1hdr	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	M - 55
1hdr_*_49	1hdr	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	Q - 62
1o7q_A_182	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	E - 192
1o7q_A_182	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	R - 194
1o7q_A_182	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	W - 195
1o7q_A_182	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	Q - 196
1o7q_A_182	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	D - 197
1o7q_A_182	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	I - 198
1o7q_A_182	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	S - 199
1o7q_A_182	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	M - 200
1o7q_A_182	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	M - 201
1o7q_A_182	1o7q	A	MNMANGANESE (II) ION	R - 202
1o7q_A_182	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	R - 202
2aaa_*_226	2aaa	*	CACALCIUM ION	E - 230
2aaa_*_226	2aaa	*	CACALCIUM ION	D - 232
3cla_*_102	3cla	*	CLMCHLORAMPHENICOL	F - 103
3cla_*_102	3cla	*	CLMCHLORAMPHENICOL	S - 104
3cla_*_102	3cla	*	CLMCHLORAMPHENICOL	A - 105
7taa_*_226	7taa	*	ABCMODIFIED ACARBOSE HEXASACCHARIDE	E - 230
7taa_*_226	7taa	*	ABCMODIFIED ACARBOSE HEXASACCHARIDE	L - 232
7taa_*_226	7taa	*	ABCMODIFIED ACARBOSE HEXASACCHARIDE	D - 233
7taa_*_226	7taa	*	ABCMODIFIED ACARBOSE HEXASACCHARIDE	G - 234
7taa_*_226	7taa	*	ABCMODIFIED ACARBOSE HEXASACCHARIDE	D - 235

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1o7q_A_182	1o7q	A	AC7UDP BINDING SITE FOR CHAIN A	R - 194
1o7q_A_182	1o7q	A	AC6UDP BINDING SITE FOR CHAIN A	W - 195
1o7q_A_182	1o7q	A	AC7UDP BINDING SITE FOR CHAIN A	D - 197
1o7q_A_182	1o7q	A	AC6UDP BINDING SITE FOR CHAIN A	I - 198
1o7q_A_182	1o7q	A	AC6UDP BINDING SITE FOR CHAIN A	S - 199
1o7q_A_182	1o7q	A	AC6UDP BINDING SITE FOR CHAIN A	R - 202

Clusters included in this Subclass