ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.18.4

Subclass Accession number: 3107
Subclass: 4.18.4

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 3

Average sequence ID (%) : 42.2 +/- 21.2
Average RMSD (Å) : 0.533 +/- 0.252

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	XXpXpTXX
(φψ)-conformation:	bbapabaa

Pattern:	[TV]	[LT]	[HT]	[AT]	[EN]	[T]	[AD]	x	[EG]	[A]	x	[AET]	x	[L]	[AER]
Conservation:	-0.007	-0.330	-0.068	-0.007	0.696	2.220	-0.488	-0.727	-0.398	1.418	-1.125	-0.899	-0.802	1.418	-0.899

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1iq4_A_152	1iq4	A	157	171	VTTANTDEEARELLA	EES-SSHHHHHHHHH	xbaxabaaaaaaaaa
1mji_A_157	1mji	A	160	174	VTTAETDEEARALLE	EES-SSHHHHHHHHH	xbaxabaaaaaaaaa
1p9r_A_357	1p9r	A	357	371	TLHTNTAVGAVTRLR	EE--SSSHHHHHHHH	bbaxabaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1mji_A_157	1mji	A	MSESELENOMETHIONINE	I - 157
1mji_A_157	1mji	A	MSESELENOMETHIONINE	V - 160
1mji_A_157	1mji	A	MGMAGNESIUM ION	V - 160
1mji_A_157	1mji	A	MGMAGNESIUM ION	T - 161
1mji_A_157	1mji	A	MGMAGNESIUM ION	T - 162
1mji_A_157	1mji	A	MGMAGNESIUM ION	A - 163
1mji_A_157	1mji	A	MGMAGNESIUM ION	E - 164
1p9r_A_357	1p9r	A	MSESELENOMETHIONINE	T - 357
1p9r_A_357	1p9r	A	MSESELENOMETHIONINE	L - 358
1p9r_A_357	1p9r	A	MSESELENOMETHIONINE	A - 363
1p9r_A_357	1p9r	A	MSESELENOMETHIONINE	V - 364
1p9r_A_357	1p9r	A	MSESELENOMETHIONINE	G - 365
1p9r_A_357	1p9r	A	MSESELENOMETHIONINE	V - 367
1p9r_A_357	1p9r	A	MSESELENOMETHIONINE	T - 368
1p9r_A_357	1p9r	A	MSESELENOMETHIONINE	R - 369
1p9r_A_357	1p9r	A	MSESELENOMETHIONINE	L - 370
1p9r_A_357	1p9r	A	MSESELENOMETHIONINE	R - 371

Clusters included in this Subclass

CLUSTER: EH.3.246

CLUSTER: EH.4.255