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Information on SUBCLASS 4.28.1
Subclass Accession number: 321
Subclass: 4.28.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0008168 (>75 %)  GO:0008757 (>75 %)  GO:0016741 (>75 %)  GO:0046914 (>75 %)  
SCOP : 53334 (>75 %)  53335 (>75 %)  
 Number of loops: 7

Average sequence ID (%) : 27.5 +/- 21.5
Average RMSD (Å) : 0.571 +/- 0.377

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XVGXpGXh
(φψ)-conformation: aaeaapbb
Pattern: x[acit][aqs]x[AFLMV]x[DRT][aikmv][IV][G]x[AEKST][G]x[IV][FITV][AGSV][civy]
Conservation:-0.642-0.383-0.271-0.910-0.261-0.455-0.230-0.6511.1022.292-1.097-0.2882.292-0.4511.015-0.097-0.302-0.664
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dl5_A_881dl5   A89106NAAVMSRVVGEKGLVVSVHHHHHHHHH-TT-EEEEEaaaaaaaaaeaaxbbbbb
1ej0_A_641ej0   A6582WSQYVVTQIGGKGRIIACHHHHHHHHH-TT-EEEEEaaaaaaaaaeaaxbbbbb
1g8a_A_871g8a   A87104TASHVSDIVGWEGKIFGIHHHHHHHHH-TTSEEEEEaaaaaaaaaeaabbbbxb
1i1n_A_901i1n   A91108LTACFARMVGCTGKVIGIHHHHHHHHH-TT-EEEEEaaaaaaaaaeaaxbbbbb
1i9g_A_1121i9g   A113130LTLSLLRAVGPAGQVISYHHHHHHHHH-TTSEEEEEaaaaaaaaaeaabbbbbb
1kp8_A_1561kp8   A161178LIAEAMDKVGKEGVITVEHHHHHHHHH-TTSEEEEEaaaaaaaaaeaaxxbbbb
1o54_A_1131o54   A114131MCAVLARAVGSSGKVFAYHHHHHHHHTTTT-EEEEEaaaaaaaaaeaaxbbxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dl5_A_881dl5   A     SAHS-ADENOSYL-L-HOMOCYSTEINE Y - 88
1dl5_A_881dl5   A     SAHS-ADENOSYL-L-HOMOCYSTEINE N - 89
1dl5_A_881dl5   A     SAHS-ADENOSYL-L-HOMOCYSTEINE A - 90
1dl5_A_881dl5   A     SAHS-ADENOSYL-L-HOMOCYSTEINE S - 105
1dl5_A_881dl5   A     SAHS-ADENOSYL-L-HOMOCYSTEINE V - 106
1dl5_A_881dl5   A     SAHS-ADENOSYL-L-HOMOCYSTEINE E - 107
1ej0_A_641ej0   A     SAMS-ADENOSYLMETHIONINE G - 64
1ej0_A_641ej0   A     SAMS-ADENOSYLMETHIONINE W - 65
1ej0_A_641ej0   A     SAMS-ADENOSYLMETHIONINE S - 66
1ej0_A_641ej0   A     HGMERCURY (II) ION A - 81
1ej0_A_641ej0   A     HGMERCURY (II) ION C - 82
1ej0_A_641ej0   A     SAMS-ADENOSYLMETHIONINE C - 82
1ej0_A_641ej0   A     HGMERCURY (II) ION D - 83
1ej0_A_641ej0   A     SAMS-ADENOSYLMETHIONINE D - 83
1i1n_A_901i1n   A     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 90
1i1n_A_901i1n   A     SAHS-ADENOSYL-L-HOMOCYSTEINE L - 91
1i1n_A_901i1n   A     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 108
1i1n_A_901i1n   A     SAHS-ADENOSYL-L-HOMOCYSTEINE D - 109
1i9g_A_1121i9g   A     SAMS-ADENOSYLMETHIONINE A - 112
1i9g_A_1121i9g   A     SAMS-ADENOSYLMETHIONINE L - 113
1i9g_A_1121i9g   A     SAMS-ADENOSYLMETHIONINE T - 114
1i9g_A_1121i9g   A     SAMS-ADENOSYLMETHIONINE Y - 130

Clusters included in this Subclass
CLUSTER: HE.4.83
CLUSTER: HE.5.78