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Information on SUBCLASS 5.4.1
Subclass Accession number: 3211
Subclass: 5.4.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 32

Average sequence ID (%) : 10.4 +/- 13.8
Average RMSD (Å) : 0.913 +/- 0.246

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXXXXhXXX
(φψ)-conformation: bbabpppaa
Pattern: xxx[adeknrst]xx[acfgilmpvy][dehknpst]x[adeknqrst]xx
Conservation:-0.6920.068-0.3650.475-0.444-1.4311.0741.444-1.4571.4740.357-0.502
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8d_*_2201a8d   -227238RIFCKALNPKEIEEESS---HHHHbbbabxxxaaaa
1aln_*_1191aln   -122133ITVNYTPCGHCREEESS---HHHHbbbabppxaaaa
1b09_A_1541b09   A160171NMWDFVLSPDEIEEESS---HHHHbbxabbxxaaaa
1b65_A_2511b65   A255266LATDLPLMPHQLEEE-S---HHHHbbbaxxbxaaaa
1cer_O_2711cer   O272283AYTEDEIVLQDIEEE-S---HHHHbbbaxxxbaaaa
1cl1_A_3101cl1   A313324FVLKKKLNNEELEEESS---HHHHbbxabxxxaaaa
1dv8_A_1631dv8   A166177WFSRSGKAWADAEE-SS-B-HHHHbbxabbbxaaaa
1e87_A_951e87   A98109FISTVKRSWTSAEE-SS-B-HHHHbbxabbbxaaaa
1g1t_A_21g1t   A415NTSTEAMTYDEAEE-SS-B-HHHHbbxaxxbxaaaa
1g8m_A_3181g8m   A320331IALSDICDVPTAEEESS-B-HHHHxbbabpxxaaaa
1gdh_A_1721gdh   A175186YFDTHRASSSDEEE-SS---HHHHbbbabxxpaaaa
1h4v_B_3571h4v   B358369EYALAPRKPAKGEE-SS---HHHHbbxabwbxaaaa
1ixh_*_521ixh   -5364GASDAPLSDEKLEEESS---HHHHbbbaxxxxaaaa
1j3v_A_841j3v   A8697WVDATSGEPEASEEE-S---HHHHbbxaxxbxaaaa
1j8u_A_2411j8u   A243254RPVAGLLSSRDFEE--S---HHHHbwbabxxxaaaa
1jhd_A_1951jhd   A198209FQTRNPMHRAHEEEESS---HHHHbxbaxxxxaaaa
1jx4_A_2951jx4   A300311RTFPHGISKETAEE-SS---HHHHbbbabxbxaaaa
1knv_A_2351knv   A238249GASSEPVSKADDEEESS---HHHHbbbabxbxaaaa
1l0w_A_3191l0w   A323334LALPKALSRKEVEEESS---HHHHbbxabxxxaaaa
1mlw_A_2281mlw   A230241RPVAGYLSPRDFEE-SSB--HHHHbxbabxxxaaaa
1n1t_A_6041n1t   A610621VLYNRRLNSSEIEEESS---HHHHbbbabxxxaaaa
1no5_A_471no5   A5162IISEEPLDFLAREE-SS---HHHHxxbabpppaaaa
1pkx_A_3171pkx   A319330VALSDVCDVPTAEEESS-B-HHHHxbbabpxxaaaa
1qlm_A_1351qlm   A139150LESSELPDEDVAEE-SS---HHHHbxbabxxxaaaa
1rdl_1_1161rdl   1118129MSSVRRMPLNRAEE-SS-B-HHHHbbxabxbxaaaa
1rgy_A_3341rgy   A338349MLANKSYPNPVREEESB---HHHHbbbabxbpaaaa
1s4n_A_1561s4n   A158169FLNDEPFTEEFKEEESS---HHHHbbbabxxxaaaa
1s7j_A_191s7j   A2435YVLEKWLPEAVMEE-SS---HHHHbxxabxxxaaaa
1sac_A_1521sac   A158169YMWDSVLPPENIEEESS---HHHHbbbabxxxaaaa
1sh0_A_3441sh0   A347358VSTDIKLDPEKLEEESS---HHHHbbbaxxbxaaaa
1uwv_A_2051uwv   A205216LRHTAPLSSADREEESS---HHHHbxbabpxxaaaa
2nac_A_2162nac   A219230YTDRHRLPESVEEE-SS---HHHHbbbabxxwaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aln_*_1191aln   *     CTD3-DEAZACYTIDINE V - 124
1aln_*_1191aln   *     CTD3-DEAZACYTIDINE Y - 126
1aln_*_1191aln   *     CTD3-DEAZACYTIDINE T - 127
1aln_*_1191aln   *     CTD3-DEAZACYTIDINE P - 128
1aln_*_1191aln   *     ZNZINC ION P - 128
1aln_*_1191aln   *     CTD3-DEAZACYTIDINE C - 129
1aln_*_1191aln   *     ZNZINC ION C - 129
1aln_*_1191aln   *     ZNZINC ION G - 130
1aln_*_1191aln   *     ZNZINC ION H - 131
1aln_*_1191aln   *     CTD3-DEAZACYTIDINE C - 132
1aln_*_1191aln   *     ZNZINC ION C - 132
1aln_*_1191aln   *     ZNZINC ION R - 133
1dv8_A_1631dv8   A     CACALCIUM ION S - 163
1dv8_A_1631dv8   A     CACALCIUM ION Y - 165
1e87_A_951e87   A     GOLGLYCEROL R - 104
1e87_A_951e87   A     GOLGLYCEROL S - 105
1e87_A_951e87   A     GOLGLYCEROL W - 106
1e87_A_951e87   A     GOLGLYCEROL T - 107
1e87_A_951e87   A     GOLGLYCEROL S - 108
1e87_A_951e87   A     GOLGLYCEROL N - 111
1e87_A_951e87   A     ZNZINC ION E - 115
1ixh_*_521ixh   *     PO4PHOSPHATE ION A - 54
1ixh_*_521ixh   *     PO4PHOSPHATE ION S - 55
1ixh_*_521ixh   *     PO4PHOSPHATE ION D - 56
1ixh_*_521ixh   *     PO4PHOSPHATE ION A - 57
1j3v_A_841j3v   A     MSESELENOMETHIONINE A - 89
1j3v_A_841j3v   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 89
1j3v_A_841j3v   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE T - 90
1j3v_A_841j3v   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE S - 91
1j8u_A_2411j8u   A     THBTETRAHYDROBIOPTERIN V - 245
1j8u_A_2411j8u   A     THBTETRAHYDROBIOPTERIN G - 247
1j8u_A_2411j8u   A     THBTETRAHYDROBIOPTERIN L - 248
1j8u_A_2411j8u   A     THBTETRAHYDROBIOPTERIN L - 249
1j8u_A_2411j8u   A     THBTETRAHYDROBIOPTERIN S - 250
1j8u_A_2411j8u   A     THBTETRAHYDROBIOPTERIN S - 251
1j8u_A_2411j8u   A     THBTETRAHYDROBIOPTERIN F - 254
1j8u_A_2411j8u   A     THBTETRAHYDROBIOPTERIN L - 255
1mlw_A_2281mlw   A     HBL7,8-DIHYDRO-L-BIOPTERIN V - 232
1mlw_A_2281mlw   A     HBL7,8-DIHYDRO-L-BIOPTERIN G - 234
1mlw_A_2281mlw   A     FEFE (III) ION Y - 235
1mlw_A_2281mlw   A     HBL7,8-DIHYDRO-L-BIOPTERIN Y - 235
1mlw_A_2281mlw   A     HBL7,8-DIHYDRO-L-BIOPTERIN L - 236
1mlw_A_2281mlw   A     HBL7,8-DIHYDRO-L-BIOPTERIN S - 237
1mlw_A_2281mlw   A     HBL7,8-DIHYDRO-L-BIOPTERIN P - 238
1mlw_A_2281mlw   A     HBL7,8-DIHYDRO-L-BIOPTERIN R - 239
1mlw_A_2281mlw   A     HBL7,8-DIHYDRO-L-BIOPTERIN F - 241
1mlw_A_2281mlw   A     HBL7,8-DIHYDRO-L-BIOPTERIN L - 242
1no5_A_471no5   A     ZNZINC ION L - 47
1no5_A_471no5   A     ZNZINC ION D - 48
1qlm_A_1351qlm   A     PO4PHOSPHATE ION E - 140
1qlm_A_1351qlm   A     PO4PHOSPHATE ION H - 152
1qlm_A_1351qlm   A     PO4PHOSPHATE ION E - 156
1rgy_A_3341rgy   A     PTX{[(2E)-2-(2-AMINO-1,3-THIAZOL-4-YL)-2-(METHOXYIMINO) ETHANOYL]AMINO}METHYLPHOSPHONIC ACID S - 343
1uwv_A_2051uwv   A     MSESELENOMETHIONINE L - 205
1uwv_A_2051uwv   A     NINICKEL (II) ION R - 206
1uwv_A_2051uwv   A     PO4PHOSPHATE ION R - 206
1uwv_A_2051uwv   A     MSESELENOMETHIONINE D - 215
1uwv_A_2051uwv   A     MSESELENOMETHIONINE L - 219
1uwv_A_2051uwv   A     MSESELENOMETHIONINE F - 222
1uwv_A_2051uwv   A     MSESELENOMETHIONINE S - 223
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1aln_*_1191aln   * ZNZN BINDING SITE.C - 129
1aln_*_1191aln   * ZNZN BINDING SITE.C - 132
1uwv_A_2051uwv   A AC5PO4 BINDING SITE FOR CHAIN AR - 206

Clusters included in this Subclass
CLUSTER: EH.4.109
CLUSTER: EH.4.144
CLUSTER: EH.4.245
CLUSTER: EH.5.213
CLUSTER: EH.5.24
CLUSTER: EH.5.57
CLUSTER: EH.6.11
CLUSTER: EH.6.59
CLUSTER: EH.6.60