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Information on SUBCLASS 5.5.4
Subclass Accession number: 3217
Subclass: 5.5.4 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 33.3 +/- 16.0
Average RMSD (Å) : 0.200 +/- 0.000

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: hGXXcXGKp
(φψ)-conformation: bepplagaa
Pattern: [ILV][ILV][LV][CL][G]x[DGT][GN][ASV][G][K][ST][AT][LY][ILT][KV][QS]
Conservation:-0.024-0.024-0.059-0.2132.025-1.526-1.0480.315-0.9792.0251.4100.174-0.114-0.385-0.775-0.689-0.114
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c1y_A_31c1y   A622LVVLGSGGVGKSALTVQEEEE-STTSSHHHHHHHbbxbexxvagaaaaaaa
1fzq_A_181fzq   A2036ILLLGLDNAGKTTLLKQEEEEESTTSSHHHHHHHbbbbexpvagaaaaaaa
1g6o_A_1741g6o   A174190VIVCGGTGSGKTTYIKSEEEEESTTSSHHHHHHHbbbbexpvagaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c1y_A_31c1y   A     GTPGUANOSINE-5'-TRIPHOSPHATE G - 10
1c1y_A_31c1y   A     GTPGUANOSINE-5'-TRIPHOSPHATE S - 11
1c1y_A_31c1y   A     GTPGUANOSINE-5'-TRIPHOSPHATE G - 12
1c1y_A_31c1y   A     GTPGUANOSINE-5'-TRIPHOSPHATE G - 13
1c1y_A_31c1y   A     GTPGUANOSINE-5'-TRIPHOSPHATE V - 14
1c1y_A_31c1y   A     GTPGUANOSINE-5'-TRIPHOSPHATE G - 15
1c1y_A_31c1y   A     MGMAGNESIUM ION K - 16
1c1y_A_31c1y   A     GTPGUANOSINE-5'-TRIPHOSPHATE K - 16
1c1y_A_31c1y   A     MGMAGNESIUM ION S - 17
1c1y_A_31c1y   A     GTPGUANOSINE-5'-TRIPHOSPHATE S - 17
1c1y_A_31c1y   A     MGMAGNESIUM ION A - 18
1c1y_A_31c1y   A     GTPGUANOSINE-5'-TRIPHOSPHATE A - 18
1c1y_A_31c1y   A     GTPGUANOSINE-5'-TRIPHOSPHATE L - 19
1fzq_A_181fzq   A     GDPGUANOSINE-5'-DIPHOSPHATE G - 24
1fzq_A_181fzq   A     GDPGUANOSINE-5'-DIPHOSPHATE L - 25
1fzq_A_181fzq   A     GDPGUANOSINE-5'-DIPHOSPHATE D - 26
1fzq_A_181fzq   A     GDPGUANOSINE-5'-DIPHOSPHATE N - 27
1fzq_A_181fzq   A     GDPGUANOSINE-5'-DIPHOSPHATE A - 28
1fzq_A_181fzq   A     GDPGUANOSINE-5'-DIPHOSPHATE G - 29
1fzq_A_181fzq   A     GDPGUANOSINE-5'-DIPHOSPHATE K - 30
1fzq_A_181fzq   A     GDPGUANOSINE-5'-DIPHOSPHATE T - 31
1fzq_A_181fzq   A     GDPGUANOSINE-5'-DIPHOSPHATE T - 32
1fzq_A_181fzq   A     GDPGUANOSINE-5'-DIPHOSPHATE L - 33
1g6o_A_1741g6o   A     MSESELENOMETHIONINE V - 174
1g6o_A_1741g6o   A     MSESELENOMETHIONINE I - 175
1g6o_A_1741g6o   A     MSESELENOMETHIONINE V - 176
1g6o_A_1741g6o   A     ADPADENOSINE-5'-DIPHOSPHATE G - 178
1g6o_A_1741g6o   A     ADPADENOSINE-5'-DIPHOSPHATE G - 179
1g6o_A_1741g6o   A     ADPADENOSINE-5'-DIPHOSPHATE T - 180
1g6o_A_1741g6o   A     ADPADENOSINE-5'-DIPHOSPHATE G - 181
1g6o_A_1741g6o   A     ADPADENOSINE-5'-DIPHOSPHATE S - 182
1g6o_A_1741g6o   A     ADPADENOSINE-5'-DIPHOSPHATE G - 183
1g6o_A_1741g6o   A     ADPADENOSINE-5'-DIPHOSPHATE K - 184
1g6o_A_1741g6o   A     ADPADENOSINE-5'-DIPHOSPHATE T - 185
1g6o_A_1741g6o   A     ADPADENOSINE-5'-DIPHOSPHATE T - 186
1g6o_A_1741g6o   A     MSESELENOMETHIONINE Y - 187
1g6o_A_1741g6o   A     ADPADENOSINE-5'-DIPHOSPHATE Y - 187
1g6o_A_1741g6o   A     MSESELENOMETHIONINE I - 188
1g6o_A_1741g6o   A     MSESELENOMETHIONINE K - 189
1g6o_A_1741g6o   A     MSESELENOMETHIONINE S - 190

Clusters included in this Subclass
CLUSTER: EH.5.251