Logo
Information on SUBCLASS 5.8.5
Subclass Accession number: 3230
Subclass: 5.8.5 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 9.3 +/- 13.3
Average RMSD (Å) : 1.500 +/- 0.173

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: hXhXpXXhX
(φψ)-conformation: bbaaabpaa
Pattern: [IMT][AGR][FY][FGV][AFP][GST][LP]x[DQY]x[PRT][FIP]x[DE][AVY][LW][DER][AEQ][AV]xx[ALV][EG][EKL][IV]
Conservation:-0.152-0.4363.017-1.099-1.005-0.0570.579-0.531-0.342-0.531-0.436-1.005-0.0571.928-0.4360.5280.2270.0370.565-1.005-1.005-0.1520.356-0.7201.732
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1qz9_A_3731qz9   A374398MRFGFTPLYTTFTEVWDAVQILGEIEEEE--TTT--HHHHHHHHHHHHHHbbbxbbaaaxxaaaaaaaaaaaaaa
1rhc_A_41rhc   A529IGYFASLEQYRPMDALEQAIRAEKVEEEE--TTTS-HHHHHHHHHHHHHHbbbbbxaaabxaaaaaaaaaaaaaa
1uf3_A_661uf3   A6690TAYVPGPQDAPIWEYLREAANVELVEEEE--TTS-SHHHHHHHHHHHHHHbbbbxbaaabwaaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1qz9_A_3731qz9   A     PLPPYRIDOXAL-5'-PHOSPHATE R - 375
1qz9_A_3731qz9   A     P3G3,6,9,12,15-PENTAOXAHEPTADECANE R - 375
1rhc_A_41rhc   A     F42COENZYME F420 F - 8
1rhc_A_41rhc   A     ACNACETONE F - 8
1rhc_A_41rhc   A     F42COENZYME F420 E - 12
1rhc_A_41rhc   A     ACNACETONE E - 12
1uf3_A_661uf3   A     MSESELENOMETHIONINE T - 66
1uf3_A_661uf3   A     CACALCIUM ION T - 66
1uf3_A_661uf3   A     MSESELENOMETHIONINE A - 67
1uf3_A_661uf3   A     CACALCIUM ION A - 67
1uf3_A_661uf3   A     MSESELENOMETHIONINE Y - 68
1uf3_A_661uf3   A     CACALCIUM ION Y - 68
1uf3_A_661uf3   A     MSESELENOMETHIONINE Q - 73
1uf3_A_661uf3   A     CACALCIUM ION Q - 73
1uf3_A_661uf3   A     MSESELENOMETHIONINE D - 74
1uf3_A_661uf3   A     CACALCIUM ION D - 74
1uf3_A_661uf3   A     CACALCIUM ION A - 75
1uf3_A_661uf3   A     CACALCIUM ION P - 76
1uf3_A_661uf3   A     CACALCIUM ION W - 78
1uf3_A_661uf3   A     CACALCIUM ION E - 79
1uf3_A_661uf3   A     MSESELENOMETHIONINE V - 87
1uf3_A_661uf3   A     MSESELENOMETHIONINE E - 88
1uf3_A_661uf3   A     CACALCIUM ION E - 88

Clusters included in this Subclass
CLUSTER: EH.6.191