ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 5.18.1

Subclass Accession number: 3248
Subclass: 5.18.1

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 11

Average sequence ID (%) : 42.2 +/- 28.9
Average RMSD (Å) : 0.445 +/- 0.364

Consensus geometry

d (Å): 9

delta (°): 0-45

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	phXXpXhPp
(φψ)-conformation:	bbpaaabaa

Pattern:	[IMTV]	x	[FILM]	[EGK]	[CLT]	[fy]	[ADGKN]	[dknq]	[iktv]	[ASV]	[EP]	[eknr]	[ST]	[ACV]	[EGKNQRT]	[DN]	[FI]	x	[adeq]	[FLVY]	[ACSV]	[KNRT]
Conservation:	0.311	-1.209	0.316	0.089	-0.044	-0.182	-0.929	-0.779	-1.043	-0.207	2.068	-0.513	1.121	-0.034	-0.780	2.180	1.821	-1.015	-1.090	-0.077	0.024	-0.026

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a33_*_18	1a33	-	23	44	IVMELYNDIAPRTCNNFLMLCT	EEEEE-TTT-HHHHHHHHHHHH	bbbbxxaaabaaaaaaaaaaaa
1dyw_A_15	1dyw	A	20	41	IVMELYDDVVPKTAGNFRALCT	EEEEE-TTT-HHHHHHHHHHHH	xbbbbxaaabaaaaaaaaaaaa
1h0p_A_39	1h0p	A	44	65	IVIGLFGKTVPKTATNFIELAK	EEEEE-TTTSHHHHHHHHHHHH	bbbxbxaaabaaaaaaaaaaaa
1ihg_A_27	1ihg	A	32	53	IVLELFADIVPKTAENFRALCT	EEEEE-TTT-HHHHHHHHHHHH	bbbxbxaaabaaaaaaaaaaaa
1ist_A_13	1ist	A	18	39	VVFKLYNDIVPKTAENFRALCT	EEEEE-TTTSHHHHHHHHHHHH	bbbbxxaaabaaaaaaaaaaaa
1j2a_A_14	1j2a	A	16	37	IELELDKQKAPVSVQNFVDYVN	EEEEE-TTT-HHHHHHHHHHHH	bbbbxxaaabaaaaaaaaaaaa
1lop_A_9	1lop	A	11	32	IVIKTFDDKAPETVKNFLDYCR	EEEEE-TTTSHHHHHHHHHHHH	bbbbxxaaabaaaaaaaaaaaa
1m7b_A_173	1m7b	A	173	194	TYIECSALQSENSVRDIFHVAT	EEEE-BTTTBHHHHHHHHHHHH	bbbbbbaaabaaaaaaaaaaaa
1qoi_A_22	1qoi	A	27	48	MKIELFADVVPKTAENFRQFCT	EEEEE-TTT-HHHHHHHHHHHH	bbbxbxaaabaaaaaaaaaaaa
2cpl_*_15	2cpl	-	20	41	VSFELFADKVPKTAENFRALST	EEEEE-TTT-HHHHHHHHHHHH	bbbxbxaaabaaaaaaaaaaaa
2rmc_A_49	2rmc	A	54	75	IVIGLFGNVVPKTVENFVALAT	EEEEE-TTTSHHHHHHHHHHHH	bbbxbxaaabaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1m7b_A_173	1m7b	A	GTPGUANOSINE-5'-TRIPHOSPHATE	C - 177
1m7b_A_173	1m7b	A	GTPGUANOSINE-5'-TRIPHOSPHATE	S - 178
1m7b_A_173	1m7b	A	GTPGUANOSINE-5'-TRIPHOSPHATE	A - 179
1m7b_A_173	1m7b	A	GTPGUANOSINE-5'-TRIPHOSPHATE	L - 180
1m7b_A_173	1m7b	A	GTPGUANOSINE-5'-TRIPHOSPHATE	Q - 181

Clusters included in this Subclass

CLUSTER: EH.5.46