ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.26.1

Subclass Accession number: 3261
Subclass: 5.26.1

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 9

Average sequence ID (%) : 47.6 +/- 26.5
Average RMSD (Å) : 0.267 +/- 0.122

Consensus geometry

d (Å): 13

delta (°): 0-45

theta (°): 90-135

rho (°): 0-45

Consensus Sequence:	XhENXMKhX
(φψ)-conformation:	bpaNaapaa

Pattern:	x	[ILV]	[TV]	[ACP]	[EG]	[N]	x	[M]	[K]	[FIMPW]	[degs]	[asv]	[ILMTV]
Conservation:	-0.854	0.349	0.137	-0.369	0.140	1.872	-1.195	1.386	1.386	-0.730	-0.873	-0.869	-0.382

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1fh9_A_39	1fh9	A	39	51	LVVAENAMKWDAT	EEEESSTTSHHHH	bbbxaNaaxaaaa
1hiz_A_55	1hiz	A	55	67	SIVAENVMKPISI	EEEESSTTSHHHH	bbbxaNaaxaaaa
1i1w_A_42	1i1w	A	42	54	QVTPENSMKWDAT	EEEESSTTSHHHH	bbbxaNaaxaaaa
1n82_A_40	1n82	A	40	52	SITAENHMKFEHL	EEEESSTTSHHHH	bbbxaaaaxaaaa
1nq6_A_39	1nq6	A	39	51	SVTPENEMKWDAV	EEEESSTTSHHHH	bbbpaaaaxaaaa
1od8_A_40	1od8	A	40	52	MVTAENEMKIDAT	EEEESSTTSHHHH	bbbxaNaaxaaaa
1ur1_A_63	1ur1	A	63	75	SITPENCMKWGVL	EEEESSTTSHHHH	bbbxaNaaxaaaa
1us3_A_291	1us3	A	291	303	HLTAGNIMKMSYM	EEEESSTTSHHHH	bbbxaaaaxaaaa
1xyz_A_555	1xyz	A	555	567	MVVCENEMKFDAL	EEEESSTTSHHHH	bbbxaaaaxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1fh9_A_39	1fh9	A	XYSXYLOPYRANOSE	E - 43
1fh9_A_39	1fh9	A	LOX3,4,5-TRIHYDOXY-PIPERIDINE-2-ONE-OXIME	E - 43
1fh9_A_39	1fh9	A	XYSXYLOPYRANOSE	N - 44
1fh9_A_39	1fh9	A	LOX3,4,5-TRIHYDOXY-PIPERIDINE-2-ONE-OXIME	N - 44
1fh9_A_39	1fh9	A	XYSXYLOPYRANOSE	K - 47
1fh9_A_39	1fh9	A	LOX3,4,5-TRIHYDOXY-PIPERIDINE-2-ONE-OXIME	K - 47
1hiz_A_55	1hiz	A	GLCGLUCOSE	E - 59
1hiz_A_55	1hiz	A	GLCGLUCOSE	N - 60
1hiz_A_55	1hiz	A	GLCGLUCOSE	K - 63
1i1w_A_42	1i1w	A	GOLGLYCEROL	E - 46
1i1w_A_42	1i1w	A	GOLGLYCEROL	N - 47
1i1w_A_42	1i1w	A	GOLGLYCEROL	K - 50
1n82_A_40	1n82	A	GOLGLYCEROL	K - 48
1od8_A_40	1od8	A	XDLXYLOSE-DERIVED ISOFAGOMINE LACTAM	E - 44
1od8_A_40	1od8	A	XYPBETA-D-XYLOPYRANOSE	E - 44
1od8_A_40	1od8	A	XDLXYLOSE-DERIVED ISOFAGOMINE LACTAM	N - 45
1od8_A_40	1od8	A	XYPBETA-D-XYLOPYRANOSE	N - 45
1od8_A_40	1od8	A	XDLXYLOSE-DERIVED ISOFAGOMINE LACTAM	K - 48
1od8_A_40	1od8	A	XYPBETA-D-XYLOPYRANOSE	K - 48
1ur1_A_63	1ur1	A	XYSXYLOPYRANOSE	E - 67
1ur1_A_63	1ur1	A	XYPBETA-D-XYLOPYRANOSE	E - 67
1ur1_A_63	1ur1	A	AHRALPHA-L-ARABINOFURANOSE	E - 67
1ur1_A_63	1ur1	A	XYSXYLOPYRANOSE	N - 68
1ur1_A_63	1ur1	A	XYPBETA-D-XYLOPYRANOSE	N - 68
1ur1_A_63	1ur1	A	AHRALPHA-L-ARABINOFURANOSE	N - 68
1ur1_A_63	1ur1	A	XYSXYLOPYRANOSE	K - 71
1ur1_A_63	1ur1	A	XYPBETA-D-XYLOPYRANOSE	K - 71
1us3_A_291	1us3	A	GOLGLYCEROL	A - 294
1us3_A_291	1us3	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	A - 294
1us3_A_291	1us3	A	GOLGLYCEROL	G - 295
1us3_A_291	1us3	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	G - 295
1us3_A_291	1us3	A	GOLGLYCEROL	N - 296
1us3_A_291	1us3	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	N - 296
1us3_A_291	1us3	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	K - 299

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1od8_A_40	1od8	A	BC1XYS BINDING SITE FOR CHAIN A	E - 44
1od8_A_40	1od8	A	AC9XDL BINDING SITE FOR CHAIN A	K - 48
1ur1_A_63	1ur1	A	AC2XYP BINDING SITE FOR CHAIN A	E - 67
1ur1_A_63	1ur1	A	AC2XYP BINDING SITE FOR CHAIN A	N - 68
1ur1_A_63	1ur1	A	AC1XYS BINDING SITE FOR CHAIN A	K - 71
1us3_A_291	1us3	A	AC1GOL BINDING SITE FOR CHAIN A	G - 295
1us3_A_291	1us3	A	AC2TRS BINDING SITE FOR CHAIN A	K - 299

Clusters included in this Subclass

CLUSTER: EH.4.81