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Information on SUBCLASS 5.56.1
Subclass Accession number: 3293
Subclass: 5.56.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 32.1 +/- 30.7
Average RMSD (Å) : 0.650 +/- 0.379

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: hpXApXXXh
(φψ)-conformation: bbFpbagaa
Pattern: [LV][HQS][AGNR][AQ][EGT][CH][GT][g][CG][AS]x[ARS][lv]
Conservation:0.788-0.024-1.1650.145-1.1631.5220.0690.7611.2440.817-1.552-0.511-0.929
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cc1_S_81cc1   S1325VQGQGCTGCSVSLEESB--SHHHHHHbbFxbavaaaaaa
1e3d_A_81e3d   A1224LHAAECTGCSEALEESB--SHHHHHHbbFxbavaaaaaa
1o75_A_531o75   A5365VSRATHGHGAFRQEEEE--SHHHHHHxbbxbagaaaaaa
1ubl_S_81ubl   S1224LHNAECTGCSESVEE-B--SHHHHHHbbFxbavaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cc1_S_81cc1   S     FE2FE (II) ION Q - 16
1cc1_S_81cc1   S     FS4IRON/SULFUR CLUSTER Q - 16
1cc1_S_81cc1   S     FE2FE (II) ION G - 17
1cc1_S_81cc1   S     FS4IRON/SULFUR CLUSTER G - 17
1cc1_S_81cc1   S     CSESELENOCYSTEINE C - 18
1cc1_S_81cc1   S     FE2FE (II) ION C - 18
1cc1_S_81cc1   S     FS4IRON/SULFUR CLUSTER C - 18
1cc1_S_81cc1   S     FS4IRON/SULFUR CLUSTER T - 19
1cc1_S_81cc1   S     FS4IRON/SULFUR CLUSTER G - 20
1cc1_S_81cc1   S     FE2FE (II) ION C - 21
1cc1_S_81cc1   S     FS4IRON/SULFUR CLUSTER C - 21
1e3d_A_81e3d   A     FSXBIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II) Y - 11
1e3d_A_81e3d   A     FSXBIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II) A - 15
1e3d_A_81e3d   A     FSXBIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II) E - 16
1e3d_A_81e3d   A     FSXBIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II) C - 17
1e3d_A_81e3d   A     FSXBIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II) T - 18
1e3d_A_81e3d   A     FSXBIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II) G - 19
1e3d_A_81e3d   A     FSXBIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II) C - 20
1e3d_A_81e3d   A     FSXBIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II) S - 21
1o75_A_531o75   A     XEXENON S - 54
1ubl_S_81ubl   S     MPD2-METHYL-2,4-PENTANEDIOL S - 8
1ubl_S_81ubl   S     FS4IRON/SULFUR CLUSTER A - 15
1ubl_S_81ubl   S     FS4IRON/SULFUR CLUSTER E - 16
1ubl_S_81ubl   S     FS4IRON/SULFUR CLUSTER C - 17
1ubl_S_81ubl   S     FS4IRON/SULFUR CLUSTER T - 18
1ubl_S_81ubl   S     FS4IRON/SULFUR CLUSTER G - 19
1ubl_S_81ubl   S     FS4IRON/SULFUR CLUSTER C - 20
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e3d_A_81e3d   A FE1THIS CLUSTER IS PRODUCED FROM AN FE4-S4 POSSIBLY RESULTS FROM LOSS OF S IN CONVERSION OF FE4-S4 CLUSTER TO FE4-S3-O3.C - 17

Clusters included in this Subclass
CLUSTER: EH.4.243