ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.2.4

Subclass Accession number: 3324
Subclass: 6.2.4

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 2.5 (>50 %)  2.5.1 (>50 %)  2.5.1.55
GO : GO:0008676 (>50 %)  GO:0016765 (>50 %)
SCOP : 51569 (>50 %)  51599 (>50 %)

Number of loops: 3

Average sequence ID (%) : 17.5 +/- 27.0
Average RMSD (Å) : 1.133 +/- 0.493

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	XXXhXXhXhX
(φψ)-conformation:	bbppaabpaa

Pattern:	[SV]	[KV]	[KL]	[GPV]	[AQ]	x	[LV]	[APS]	[PV]	x	[DEQ]	x	[AGK]	[NP]	[FIV]	x	[DEQ]	[AK]	[AFL]	[KL]	[EFR]
Conservation:	-0.615	-0.096	-0.096	-1.747	0.576	0.186	1.539	-0.183	0.942	-0.965	1.538	-0.339	-0.809	1.075	0.600	-1.069	1.538	0.576	-0.965	-0.096	-1.591

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1d9e_A_1134	1d9e	A	1137	1157	VKKPQFVSPGQMGNIVDKFKE	EE--TTS-GGGHHHHHHHHHH	xxxpaabxaaaaaaaaaaaaa
1pe1_A_1120	1pe1	A	1123	1143	VKKGQFLAPWDTKNVVEKLKF	EE--TT--GGGGHHHHHHHHH	bxxpaaxxaaaaaaaaaaaaa
1qop_A_125	1qop	A	125	145	SVLVADVPVEESAPFRQAALR	EEEETT--GGG-HHHHHHHHH	bbbxaabxaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1pe1_A_1120	1pe1	A	2PG2-PHOSPHOGLYCERIC ACID	K - 1124
1pe1_A_1120	1pe1	A	2PG2-PHOSPHOGLYCERIC ACID	K - 1125
1pe1_A_1120	1pe1	A	2PG2-PHOSPHOGLYCERIC ACID	Q - 1127
1qop_A_125	1qop	A	IPLINDOLE-3-PROPANOL PHOSPHATE	L - 127
1qop_A_125	1qop	A	IPLINDOLE-3-PROPANOL PHOSPHATE	A - 129

Clusters included in this Subclass

CLUSTER: EH.9.62