ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 6.11.1

Subclass Accession number: 3344
Subclass: 6.11.1

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 7

Average sequence ID (%) : 20.1 +/- 22.2
Average RMSD (Å) : 1.229 +/- 0.229

Consensus geometry

d (Å): 13

delta (°): 0-45

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	hXXpphppXp
(φψ)-conformation:	bbaaababaa

Pattern:	[ilv]	[FLM]	[ACNS]	x	[EN]	[KST]	[ILMVY]	[eks]	[DST]	x	[AERS]	[DENQS]	[akmv]	[fikl]	x	[ALV]	[AILMT]	[adkqrs]
Conservation:	0.139	1.423	-0.262	-1.047	2.202	1.165	0.359	-0.438	0.714	-1.280	0.393	0.626	-0.741	-1.106	-0.673	0.370	-0.421	-1.425

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aox_A_191	1aox	A	194	211	VFNLNTYKTKEEMIVATS	EE-TTT--SHHHHHHHHH	abxaaababaaaaaaaaa
1jpm_A_241	1jpm	A	241	258	IMADESVFTPRQAFEVLQ	EEESTT-SSHHHHHHHHH	bbxaaababaaaaaaaaa
1luc_B_294	1luc	B	296	313	LMSFESMEDKAQQRAVID	EEE-TT---HHHHHHHHH	bbbaaaxaxaaaaaaaaa
1muc_A_246	1muc	A	246	263	IMADESIESVEDAFSLAA	EEESTT-SSHHHHHHHHH	xbxaaababaaaaaaaaa
1nfp_*_192	1nfp	-	195	212	LFCFESMKDQENKKSLMI	EEE-TT---HHHHHHHHH	bbbaaaxaxaaaaaaaaa
1nu5_A_241	1nu5	A	242	259	ILADESLSSLSSAFELAR	EEESTT--SHHHHHHHHH	bbxaaaxIxaaaaaaaaa
1pt6_A_190	1pt6	A	193	210	EFNLNKYSSTEEVLVAAK	EE-TTT-SSHHHHHHHHH	abxaaababaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1jpm_A_241	1jpm	A	MGMAGNESIUM ION	D - 244
1jpm_A_241	1jpm	A	MGMAGNESIUM ION	E - 245
1luc_B_294	1luc	B	EDO1,2-ETHANEDIOL	D - 304
1luc_B_294	1luc	B	EDO1,2-ETHANEDIOL	Q - 307
1muc_A_246	1muc	A	MNMANGANESE (II) ION	M - 247
1muc_A_246	1muc	A	MNMANGANESE (II) ION	D - 249
1muc_A_246	1muc	A	MNMANGANESE (II) ION	E - 250
1nfp_*_192	1nfp	*	MYRMYRISTIC ACID	F - 194
1nfp_*_192	1nfp	*	MYRMYRISTIC ACID	F - 196
1nfp_*_192	1nfp	*	MYRMYRISTIC ACID	F - 198
1nfp_*_192	1nfp	*	MYRMYRISTIC ACID	L - 210
1nfp_*_192	1nfp	*	MYRMYRISTIC ACID	M - 211
1nfp_*_192	1nfp	*	MYRMYRISTIC ACID	F - 214
1nfp_*_192	1nfp	*	FMNFLAVIN MONONUCLEOTIDE	R - 217
1nfp_*_192	1nfp	*	MYRMYRISTIC ACID	R - 217
1nfp_*_192	1nfp	*	MYRMYRISTIC ACID	V - 218
1nfp_*_192	1nfp	*	MYRMYRISTIC ACID	I - 219
1nfp_*_192	1nfp	*	FMNFLAVIN MONONUCLEOTIDE	Y - 221
1nfp_*_192	1nfp	*	MYRMYRISTIC ACID	Y - 221
1nfp_*_192	1nfp	*	MYRMYRISTIC ACID	R - 222
1nu5_A_241	1nu5	A	MNMANGANESE (II) ION	A - 241
1nu5_A_241	1nu5	A	MNMANGANESE (II) ION	I - 242
1nu5_A_241	1nu5	A	MNMANGANESE (II) ION	D - 245
1nu5_A_241	1nu5	A	MNMANGANESE (II) ION	E - 246

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1muc_A_246	1muc	A	MNARESIDUES INVOLVED IN THE COORDINATION OF MN-ION IN CHAIN A.	D - 249

Clusters included in this Subclass

CLUSTER: EH.6.55