ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 6.22.1

Subclass Accession number: 3360
Subclass: 6.22.1

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 4

Average sequence ID (%) : 24.2 +/- 33.8
Average RMSD (Å) : 0.725 +/- 0.386

Consensus geometry

d (Å): 13

delta (°): 45-90

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	hXhcXXXXXX
(φψ)-conformation:	bbeaaaapaa

Pattern:	[ad]	[GIL]	x	[FLV]	[dv]	[CG]	[GN]	[ADS]	[tv]	[AR]	x	[NP]	[EFK]	[ILTV]	[mq]	[KQR]	[FLV]	x	[GQS]	[d]
Conservation:	-1.303	-1.054	-0.678	0.119	-0.628	0.983	2.143	-0.122	-0.868	0.914	-1.621	1.702	-0.893	0.116	0.192	1.280	0.119	0.095	-0.290	-0.206

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bu6_O_405	1bu6	O	405	424	ALRVDGGAVANNFLMQFQSD	EEEEESGGGG-HHHHHHHHH	bbxbbeaaaaxaaaaaaaaa
1bup_A_333	1bup	A	333	352	DIVLVGGSTRIPKIQKLLQD	EEEEESGGGG-HHHHHHHHH	bbbxbMaaaaxaaaaaaaaa
1fo6_A_165	1fo6	A	167	186	MGMFICNDRRWPETWRVMGL	EEE--GGGGG-HHHHHHHHH	bbbbbeaaaabaaaaaaaaa
1s3x_A_333	1s3x	A	333	352	DLVLVGGSTRIPKVQKLLQD	EEEEESGGGGSHHHHHHHHH	bbbxbMaaaaxaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bup_A_333	1bup	A	MGMAGNESIUM ION	V - 337
1bup_A_333	1bup	A	MGMAGNESIUM ION	G - 338
1bup_A_333	1bup	A	ADPADENOSINE-5'-DIPHOSPHATE	G - 338
1bup_A_333	1bup	A	ADPADENOSINE-5'-DIPHOSPHATE	G - 339
1bup_A_333	1bup	A	ADPADENOSINE-5'-DIPHOSPHATE	S - 340
1bup_A_333	1bup	A	ADPADENOSINE-5'-DIPHOSPHATE	T - 341
1bup_A_333	1bup	A	ADPADENOSINE-5'-DIPHOSPHATE	R - 342
1bup_A_333	1bup	A	ADPADENOSINE-5'-DIPHOSPHATE	I - 343
1fo6_A_165	1fo6	A	XEXENON	P - 178
1fo6_A_165	1fo6	A	XEXENON	E - 179
1fo6_A_165	1fo6	A	XEXENON	R - 182
1s3x_A_333	1s3x	A	CACALCIUM ION	V - 337
1s3x_A_333	1s3x	A	ADPADENOSINE-5'-DIPHOSPHATE	V - 337
1s3x_A_333	1s3x	A	CACALCIUM ION	G - 338

Clusters included in this Subclass

CLUSTER: EH.7.82